Table 5.
Summarized SNP genotypes and known sequence variations for Slc6a3 and Slc9a9. WKY/NCrl-US rats are predicted and confirmed to have Slc6a3 insertion and Slc9a9 double mutations
| SNP Genotypes |
Known Genetic Variations |
Prediction & Sequence Verification |
|||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Chr: Position | Allele | SHR/NCrl (STAR) | WKY/NMna (STAR) Or/NCrl (US) | WKY/NCrl (Ge) | WKY/NHsd Or/Ztm (STAR) | SHR/NCrl | WKY/NHsd | WKY/NCrl (Ge) | Ref. No. | WKY/NCrl (Ge) | WKY/NCrl (US) |
| 1: 30153588 | G/A | AA | AA | GG | Slc6a3 Insertion | no insertion | (15) | Slc6a3 Insertion | Slc6a3 Insertion | ||
| 8: 99572345 | A/G | AA | GG | GG | AA | Slc9a9 512V and 534K | Slc9a9 512V and 534K | Slc9a9 512G and 534R | (37) | Slc9a9 512G and 534R | |
| 8: 100139524 | G/C | GG | CC | GG | |||||||