Table 3.
The cloud computing software for NGS data analysis.
| Software | Website | Description | References |
|---|---|---|---|
| Crossbow | http://bowtie-bio.sourceforge.net/crossbow/ | Read mapping and SNP calling | [56] |
| CloudBurst | http://cloudburst-bio.sourceforge.net/ | Reference-based read mapping | [57] |
| Contrail | http://contrail-bio.sourceforge.net/ | De novo read assembly | [58] |
| Cloud-MAQ | http://sourceforge.net/projects/cloud-maq/ | Read mapping and assembly | [59] |
| Bioscope | http://www.lifescopecloud.com/ | Reference-based read mapping | [60] |
| GeneSifter | http://www.geospiza.com/Products/AnalysisEdition.shtml | Customer oriented NGS data analysis services | [61] |
| CloudAligner | http://sourceforge.net/projects/cloudaligner/ | Read mapping | [62] |
| Roundup | http://rodeo.med.harvard.edu/tools/roundup | Optimized computation for comparative genomics | [63] |
| PeakRanger | http://www.modencode.org/software/ranger/ | Peak caller for ChIP-Seq data | [64] |
| Myrna | http://bowtie-bio.sf.net/myrna/ | Differential expression analysis for RNA-Seq data | [65] |
| ArrayExpressHTS | http://www.ebi.ac.uk/Tools/rwiki/ | RNA-Seq data processing and quality assessment | [66] |
| SeqMapreduce | Not available | Read mapping | [67] |
| BaseSpace | https://basespace.illumina.com/home/index |