Table 1.

False Discovery Rate estimated by randomization of hybridization ratios both between genes and between arrays using permutation with replacement and resampling for analyses conducted at the level of phenotype and sex. The number of features identified by analysis of the permutated dataset as significant for each threshold is reported as the average (n=5) percentage of the number of features identified at that threshold by analysis of the original dataset.

		Bayesian Probability Threshold
		>=0.99	>=0.995	>=0.999	>=0.9995
phenotypes compared	Male Dominant > Male Subordinate	89	61	41	37
	Male Dominant > female	273	218	148	127
	Male Subordinate > Male Dominant	84	61	26	23
	Male Subordinate > female	277	220	136	116
	Female > Dominant male	205	154	96	78
	Female > Subordinate Male	219	164	95	83
	Males > Female	318	269	174	147
	Female > Males	253	211	119	103
	FDR %	17.08	10.76	3	2.07
	Sterr	0.61	0.57	0.39	0.39