Table 2. Assembly details.

High confidence datasets included only contigs that matched a single reference, had sequence similarity >99%, and covered ≥90% of length of reference.

Dataset	Error corr. method	Raw assembly size	High conf. size
Simulated reads
	None	64491 (78Mb)	38459 (27Mb)
	AllPathsLG	64682 (78Mb)	38628 (27Mb)
	Sga	65059 (80Mb)	38619 (27Mb)
	Reptile	63099 (73Mb)	38670 (25Mb)
	Seecer	65468 (80Mb)	38407 (27Mb)
Empiric reads
	None	57338 (74Mb)	21406 (24Mb)
	AllPathsLG	53884 (66Mb)	21204 (23Mb)
	Sga	56707 (75Mb)	21323 (24Mb)
	Reptile	53780 (60Mb)	21850 (22Mb)
	Seecer	57311 (75Mb)	21268 (24Mb)