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. Author manuscript; available in PMC: 2013 Jul 31.

Published in final edited form as: Stat Appl Genet Mol Biol. 2012 Jan 6;11(2):10.2202/1544-6115.1713 /j/sagmb.2012.11.issue-2/1544-6115.1713/1544-6115.1713.xml. doi: 10.2202/1544-6115.1713

Transition points in model inferences. (A) transition from error to de novo mutation, (B) effect of depth on error-mutation transition, (C) effect of low parent depth, (D) effect of low offspring depth, (E) transition from de novo mutation to inherited allele, (F) transition from de novo mutation to inferred inheritance. The parameter values used are θ = 0.001, ε = 0.01, μ = 2 × 10⁻⁷, μ_s = 0.0. The read structures are given in the tables; each row represents the read data taken for a family member, with the offspring data (O) as the bottom row, and the columns represent the number of reads observed for each allele. ‘G’ and ‘T’ read counts are always 0.

Transition points in model inferences. (A) transition from error to de novo mutation, (B) effect of depth on error-mutation transition, (C) effect of low parent depth, (D) effect of low offspring depth, (E) transition from de novo mutation to inherited allele, (F) transition from de novo mutation to inferred inheritance. The parameter values used are θ = 0.001, ε = 0.01, μ = 2 × 10⁻⁷, μ_s = 0.0. The read structures are given in the tables; each row represents the read data taken for a family member, with the offspring data (O) as the bottom row, and the columns represent the number of reads observed for each allele. ‘G’ and ‘T’ read counts are always 0.