Table 3.
Summary of nucleotide divergence between Bruguiera gymnorrhiza and Bruguiera sexangula
| Length (including gaps) | n | Fix | Indel | Ks | Ka | Ka/Ks | |
|---|---|---|---|---|---|---|---|
| Nuclear gene | |||||||
| NAC | 370 | 298 | 4 (2/2) | 0 | 21.92 | 0.00 | 0.00 |
| VVHP | 575 | 298 | 5 (5/0) | 1 | 23.25 | 2.51 | 0.11 |
| PO | 536 | 298 | 1 (1/0) | 1 | 4.37 | 0.00 | 0.00 |
| GM | 495 | 298 | 4 (3/1) | 1 | 22.21 | 4.85 | 0.22 |
| SF | 407 | 298 | 4 (0/4) | 0 | 49.25 | 0.00 | 0.00 |
| EXP2 | 538 | 296 | 4 (4/0) | 1 | 25.70 | 0.00 | 0.00 |
| UNK | 426 | 298 | 3 (2/1) | 0 | 19.81 | 4.04 | 0.20 |
| EPCRF | 408 | 298 | 1 (0/1) | 0 | 24.56 | 3.13 | 0.13 |
| PAL1 | 704 | 298 | 2 (1/1) | 0 | 7.92 | 2.54 | 0.32 |
| mang-1 | 842 | 298 | 11 (11/0) | 2 | 17.23 | 0.00 | 0.00 |
| Average | 530 | 297.8 | 3.9 | 0.6 | 21.62 | 1.71 | 0.10 |
| cpDNA region | |||||||
| trnS-trnG | 581 | 149 | 2 | 0 | 3.34 | 0.00 | 0.00 |
Length, Sequence length includes alignment gaps. n, number of sequences; Fix, number of fixed nucleotide differences between the species excluding indels. Numbers of silent/replacement differences are shown in parentheses; Indel, number of fixed indels between the species. A continuous gap was counted as a single indel; Ks, number of nucleotide substitutions per silent site with the Jukes and Cantor (1969) correction. Indels are not included. The value was multiplied by 103; Ka, number of nucleotide substitution per replacement site with the Jukes and Cantor (1969) correction. Indels are not included. The value was multiplied by 103.