Table 2.
Summary statistics of alternative splicing in P. patens genes
| # Assemblies | % Assemblies | # Sub clusters | % Sub clusters | # Genes | % Genes | |
|---|---|---|---|---|---|---|
|
involved in alt-splicing |
12,941 |
27.21 |
5,195 |
13.28 |
5,177 |
14.65 |
|
alt_acceptor |
4,443 |
34.33 |
1,649 |
31.74 |
1,657 |
32.01 |
|
alt_donor |
3,940 |
30.45 |
1,414 |
27.22 |
1,433 |
27.68 |
|
alternate_exon |
2,423 |
18.72 |
886 |
17.05 |
908 |
17.54 |
|
ends_in_intron |
989 |
7.64 |
836 |
16.09 |
836 |
16.15 |
|
retained_exon |
800 |
6.18 |
552 |
10.63 |
574 |
11.09 |
|
retained_intron |
2,692 |
20.8 |
2,055 |
39.56 |
2,082 |
40.22 |
|
skipped_exon |
810 |
6.26 |
552 |
10.63 |
575 |
11.11 |
|
spliced_intron |
3,523 |
27.22 |
2,055 |
39.56 |
2,080 |
40.18 |
| starts_in_intron | 1,162 | 8.98 | 1,010 | 19.44 | 1,033 | 19.95 |
Overview of the alternative splicing events observed in P. patens using the PASA software and ~300,000 ESTs.