Table 4.
Comparison of the Gene Ontology (GO) annotation of P. patens V1.2 and V1.6
| Total GO terms | BP terms | MF terms | CC terms | Genes with GO terms | Genes with BP | Genes with MF | Genes with CC | Protein-coding genes | |
|---|---|---|---|---|---|---|---|---|---|
|
V1.2 |
56,935 |
10,681 |
39,894 |
6,360 |
11,586 |
8,449 |
10,408 |
4,774 |
27,966 |
| (41%) |
(30%) |
(37%) |
(17%) |
||||||
|
V1.6 |
66,234 |
15,581 |
24,415 |
26,238 |
18,786 |
10,326 |
13,110 |
14,839 |
32,275 |
| (58%) | (32%) | (41%) | (46%) |
A general increase of protein-coding genes with an assigned GO term could be achieved in V1.6. The number of GO terms “molecular function” has been manually corrected for V1.2 (see text in section). BP – “biological process”: MF – “molecular function”; CC –“cellular component”.