Table 5.
Selected GO categories: P. patens in comparison to A. thaliana
| Gene family | q-value | GO term id | GO term | P. patens | A. thaliana |
|---|---|---|---|---|---|
| Two component system – histidine kinases and response regulators |
6.91E-26 |
GO:0000160 |
two-component signal transduction system (phosphorelay) |
124 |
78 |
| 4.60E-24 |
GO:0018106 |
peptidyl-histidine phosphorylation |
72 |
3 |
|
| 1.03E-28 |
GO:0000155 |
two-component sensor activity |
95 |
3 |
|
| 1.34E-08 |
GO:0000156 |
two-component response regulator activity |
86 |
35 |
|
| LHCs |
1.39E-09 |
GO:0009765 |
photosynthesis, light harvesting |
45 |
21 |
| flagellum |
0.000155148 |
GO:0001539 |
ciliary or flagellar motility |
10 |
- |
| 3.11E-05 |
GO:0019861 |
flagellum |
19 |
- |
|
| 0.000496321 |
GO:0030286 |
dynein complex |
12 |
- |
|
| PAL |
0.000726755 |
GO:0006559 |
L-phenylalanine catabolic process |
14 |
3 |
| 0.010050079 |
GO:0016841 |
ammonia-lyase activity |
17 |
5 |
|
| ALDH | 0.000574734 | GO:0004365 | glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity | 18 | 4 |
The GO enrichment analysis was performed using topGO with a q-value cut-off <0.05. Depicted are only GO terms overrepresented in P. patens and associated with the gene families reported to be expanded in P. patens.