Table 6.
Pairwise comparison of Ka/Ks ratio in various strains of studied genera
| Strains | Ka/Ks ratio between various pairs | ||||
|---|---|---|---|---|---|
|
Frankia |
F1 (Fd)♠ |
F2 (Fc)♠ |
F3 (Fa)♣ |
F4 (Fu)♥ |
F5 (Fe)♥ |
| F1 (datisca)♠ |
- |
0.059** |
0.038** |
0.015 |
0.003 |
| F2 (CcI3)♠ |
|
- |
0.026** |
0.005 |
0.027* |
| F3 (ACN14a)♣ |
|
|
- |
0.013 |
0.020 |
| F4 (EuI1b)♥ |
|
|
|
- |
0.008 |
| F5 (EaN1pec)♥ |
|
|
|
|
- |
|
Mycobacterium |
M1 (Mt)♦ |
M2 (Ml)♦ |
M3 (Mu)♦ |
M4 (Ms)♪ |
M5 (Mv)♪ |
| M1 (tuberculosis)♦ |
- |
0.034** |
0.023** |
0.000 |
0.002 |
| M2 (leprae)♦ |
|
- |
0.013** |
0.007 |
0.002 |
| M3 (ulcerans)♦ |
|
|
- |
0.004 |
0.003 |
| M4 (smegmatis) ♪ |
|
|
|
- |
0.01 |
| M5 (vanbaalenii) ♪ |
|
|
|
|
- |
|
Streptomyces |
S1 (Ss)♦ |
S2 (So)♦ |
S3 (Sc)♪ |
S4 (Sa)♪ |
S5 (Sg)♪ |
| S1 (scabiei)♦ |
- |
0.016** |
0.018** |
0.018** |
0.003 |
| S2 (somaliensis)♦ |
|
- |
0.008 |
0.011 |
0.002 |
| S3 (coelicolor)♪ |
|
|
- |
0.012 |
0.005 |
| S4 (avermitilis)♪ |
|
|
|
- |
0.007 |
| S5 (griseus)♪ | - | ||||
Strains of Frankia: Symbiont of Datisca glomerata (F1), CcI3 (F2), ACN14a (F3), Eul1c (F4), EAN1pec (F5); Strains of Mycobacterium: M. tuberculosis CDC1551 (M1), M. leprae TN (M2), M. ulcerans Agy99 (M3), M. smegmatis MC2 155 (M4), M. vanbaalenii PYR-1(M5); Strains of Streptomyces : (2) S. scabiei (S1), S. somaliensis (S2), S. coelicolor A3(S3), S. avermitilis MA-4680 (S4) and S. griseus griseus NBRC 13350 (S5) Each cell represents the difference between Average Ka/Ks value of secretory protein genes and non-secretory protein genes. Symbols: *=Significant @ p<0.05 level; **=Significant @ p<0.01 level; ♥=Predominantly free-living Facultative symbiont (GroupA); ♣=Partly free-living Facultative symbiont (GroupB); ♠=Marginally free-living / Obligate symbiont (GroupC); ♦=Pathogen; ♪=Non pathogen.