Table 3. Mean content of parallel -sheet (in %) and the results of the MM/GBSA calculation (in kcalmol).
Oligomer | whole protein | in the N-terminus | in the C-terminus | interaction energy |
O4 | 50.04 | 77.12 | 45.80 | –* |
O5 | 48.10 | 76.13 | 36.97 | –* |
O6 | 53.54 | 83.82 | 49.18 | –* |
O8 | 60.24 | 85.68 | 56.97 | –131.26 |
O10 | 56.01 | 83.63 | 50.67 | –122.10 |
O12 | 60.24 | 82.35 | 63.14 | –141.61 |
O24 | 66.37 | 87.81 | 73.52 | –96.31 |
O48 | 67.27 | 87.03 | 78.73 | –35.49 |
O2×4 | 60.90 | 53.59 | 45.64 | –80.72 |
O2×5 | 60.78 | 59.60 | 53.95 | –117.12 |
O2×6 | 63.00 | 62.50 | 61.28 | –150.84 |
O2×12 | 68.74 | 77.14 | 79.02 | –266.96 |
O2×24 | 71.19 | 86.67 | 86.79 | –565.28 |
The small oligomers O4, O5, and O6 were excluded from energetical analysis because no protofilament pair complement existed in this study.