Skip to main content
Microbiological Reviews logoLink to Microbiological Reviews
. 1994 Sep;58(3):563–602. doi: 10.1128/mr.58.3.563-602.1994

Bacterial gene transfer by natural genetic transformation in the environment.

M G Lorenz 1, W Wackernagel 1
PMCID: PMC372978  PMID: 7968924

Abstract

Natural genetic transformation is the active uptake of free DNA by bacterial cells and the heritable incorporation of its genetic information. Since the famous discovery of transformation in Streptococcus pneumoniae by Griffith in 1928 and the demonstration of DNA as the transforming principle by Avery and coworkers in 1944, cellular processes involved in transformation have been studied extensively by in vitro experimentation with a few transformable species. Only more recently has it been considered that transformation may be a powerful mechanism of horizontal gene transfer in natural bacterial populations. In this review the current understanding of the biology of transformation is summarized to provide the platform on which aspects of bacterial transformation in water, soil, and sediments and the habitat of pathogens are discussed. Direct and indirect evidence for gene transfer routes by transformation within species and between different species will be presented, along with data suggesting that plasmids as well as chromosomal DNA are subject to genetic exchange via transformation. Experiments exploring the prerequisites for transformation in the environment, including the production and persistence of free DNA and factors important for the uptake of DNA by cells, will be compiled, as well as possible natural barriers to transformation. The efficiency of gene transfer by transformation in bacterial habitats is possibly genetically adjusted to submaximal levels. The fact that natural transformation has been detected among bacteria from all trophic and taxonomic groups including archaebacteria suggests that transformability evolved early in phylogeny. Probable functions of DNA uptake other than gene acquisition will be discussed. The body of information presently available suggests that transformation has a great impact on bacterial population dynamics as well as on bacterial evolution and speciation.

Full text

PDF
565

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Aardema B. W., Lorenz M. G., Krumbein W. E. Protection of sediment-adsorbed transforming DNA against enzymatic inactivation. Appl Environ Microbiol. 1983 Aug;46(2):417–420. doi: 10.1128/aem.46.2.417-420.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Ahrenholtz I., Lorenz M. G., Wackernagel W. The extracellular nuclease of Serratia marcescens: studies on the activity in vitro and effect on transforming DNA in a groundwater aquifer microcosm. Arch Microbiol. 1994;161(2):176–183. doi: 10.1007/BF00276480. [DOI] [PubMed] [Google Scholar]
  3. Albano M., Hahn J., Dubnau D. Expression of competence genes in Bacillus subtilis. J Bacteriol. 1987 Jul;169(7):3110–3117. doi: 10.1128/jb.169.7.3110-3117.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Albritton W. L., Setlow J. K., Slaney L. Transfer of Haemophilus influenzae chromosomal genes by cell-to-cell contact. J Bacteriol. 1982 Dec;152(3):1066–1070. doi: 10.1128/jb.152.3.1066-1070.1982. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Albritton W. L., Setlow J. K., Thomas M., Sottnek F., Steigerwalt A. G. Heterospecific transformation in the genus Haemophilus. Mol Gen Genet. 1984;193(2):358–363. doi: 10.1007/BF00330693. [DOI] [PubMed] [Google Scholar]
  6. Bagci H., Stuy J. H. A hex mutant of Haemophilus influenzae. Mol Gen Genet. 1979 Sep;175(2):175–179. doi: 10.1007/BF00425533. [DOI] [PubMed] [Google Scholar]
  7. Behnke D. Plasmid transformation of Streptococcus sanguis (Challis) occurs by circular and linear molecules. Mol Gen Genet. 1981;182(3):490–497. doi: 10.1007/BF00293940. [DOI] [PubMed] [Google Scholar]
  8. Bergan T., Vaksvik A. K. Taxonomic implications of quantitative transformation in Acinetobacter calcoaceticus. Zentralbl Bakteriol Mikrobiol Hyg A. 1983 Apr;254(2):214–228. [PubMed] [Google Scholar]
  9. Bergh O., Børsheim K. Y., Bratbak G., Heldal M. High abundance of viruses found in aquatic environments. Nature. 1989 Aug 10;340(6233):467–468. doi: 10.1038/340467a0. [DOI] [PubMed] [Google Scholar]
  10. Bertani G., Baresi L. Genetic transformation in the methanogen Methanococcus voltae PS. J Bacteriol. 1987 Jun;169(6):2730–2738. doi: 10.1128/jb.169.6.2730-2738.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Bishop P. E., Dazzo F. B., Appelbaum E. R., Maier R. J., Brill W. J. Intergeneric transfer of genes involved in the Rhizobium-legume symbiosis. Science. 1977 Dec 2;198(4320):938–940. doi: 10.1126/science.929179. [DOI] [PubMed] [Google Scholar]
  12. Bogosian G., Kane J. F. Fate of recombinant Escherichia coli K-12 strains in the environment. Adv Appl Microbiol. 1991;36:87–131. doi: 10.1016/s0065-2164(08)70452-0. [DOI] [PubMed] [Google Scholar]
  13. Borenstein S., Ephrati-Elizur E. Spontaneous release of DNA in sequential genetic order by Bacillus subtilis. J Mol Biol. 1969 Oct 14;45(1):137–152. doi: 10.1016/0022-2836(69)90216-2. [DOI] [PubMed] [Google Scholar]
  14. Bouma J. E., Lenski R. E. Evolution of a bacteria/plasmid association. Nature. 1988 Sep 22;335(6188):351–352. doi: 10.1038/335351a0. [DOI] [PubMed] [Google Scholar]
  15. Bowler L. D., Zhang Q. Y., Riou J. Y., Spratt B. G. Interspecies recombination between the penA genes of Neisseria meningitidis and commensal Neisseria species during the emergence of penicillin resistance in N. meningitidis: natural events and laboratory simulation. J Bacteriol. 1994 Jan;176(2):333–337. doi: 10.1128/jb.176.2.333-337.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Bratbak G., Heldal M., Norland S., Thingstad T. F. Viruses as partners in spring bloom microbial trophodynamics. Appl Environ Microbiol. 1990 May;56(5):1400–1405. doi: 10.1128/aem.56.5.1400-1405.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Buitenwerf J., Venema G. Transformation in Bacillus subtilis: biological and physical evidence for a novel DNA-intermediate in synchronously transforming cells. Mol Gen Genet. 1977 Nov 14;156(2):145–155. doi: 10.1007/BF00283487. [DOI] [PubMed] [Google Scholar]
  18. Buzby J. S., Porter R. D., Stevens S. E., Jr Plasmid transformation in Agmenellum quadruplicatum PR-6: construction of biphasic plasmids and characterization of their transformation properties. J Bacteriol. 1983 Jun;154(3):1446–1450. doi: 10.1128/jb.154.3.1446-1450.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Byrd J. J., Leahy J. G., Colwell R. R. Determination of plasmid DNA concentration maintained by nonculturable Escherichia coli in marine microcosms. Appl Environ Microbiol. 1992 Jul;58(7):2266–2270. doi: 10.1128/aem.58.7.2266-2270.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Børsheim K. Y., Bratbak G., Heldal M. Enumeration and biomass estimation of planktonic bacteria and viruses by transmission electron microscopy. Appl Environ Microbiol. 1990 Feb;56(2):352–356. doi: 10.1128/aem.56.2.352-356.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. CATLIN B. W. Extracellular deoxyribonucleic acid of bacteria and a deoxyribonuclease inhibitor. Science. 1956 Sep 7;124(3219):441–442. doi: 10.1126/science.124.3219.441. [DOI] [PubMed] [Google Scholar]
  22. CATLIN B. W. Transformation of Neisseria meningitidis by deoxyribonucleates from cells and from culture slime. J Bacteriol. 1960 Apr;79:579–590. doi: 10.1128/jb.79.4.579-590.1960. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Canosi U., Iglesias A., Trautner T. A. Plasmid transformation in Bacillus subtilis: effects of insertion of Bacillus subtilis DNA into plasmid pC194. Mol Gen Genet. 1981;181(4):434–440. doi: 10.1007/BF00428732. [DOI] [PubMed] [Google Scholar]
  24. Carlson C. A., Pierson L. S., Rosen J. J., Ingraham J. L. Pseudomonas stutzeri and related species undergo natural transformation. J Bacteriol. 1983 Jan;153(1):93–99. doi: 10.1128/jb.153.1.93-99.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Chamier B., Lorenz M. G., Wackernagel W. Natural Transformation of Acinetobacter calcoaceticus by Plasmid DNA Adsorbed on Sand and Groundwater Aquifer Material. Appl Environ Microbiol. 1993 May;59(5):1662–1667. doi: 10.1128/aem.59.5.1662-1667.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Chauvat F., Astier C., Vedel F., Joset-Espardellier F. Transformation in the cyanobacterium Synechococcus R2: improvement of efficiency; role of the pUH24 plasmid. Mol Gen Genet. 1983;191(1):39–45. doi: 10.1007/BF00330887. [DOI] [PubMed] [Google Scholar]
  27. Cheah U. E., Weigand W. A., Stark B. C. Effects of recombinant plasmid size on cellular processes in Escherichia coli. Plasmid. 1987 Sep;18(2):127–134. doi: 10.1016/0147-619x(87)90040-0. [DOI] [PubMed] [Google Scholar]
  28. Chen J. D., Morrison D. A. Modulation of competence for genetic transformation in Streptococcus pneumoniae. J Gen Microbiol. 1987 Jul;133(7):1959–1967. doi: 10.1099/00221287-133-7-1959. [DOI] [PubMed] [Google Scholar]
  29. Claverys J. P., Lacks S. A. Heteroduplex deoxyribonucleic acid base mismatch repair in bacteria. Microbiol Rev. 1986 Jun;50(2):133–165. doi: 10.1128/mr.50.2.133-165.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
  30. Coffey T. J., Dowson C. G., Daniels M., Spratt B. G. Horizontal spread of an altered penicillin-binding protein 2B gene between Streptococcus pneumoniae and Streptococcus oralis. FEMS Microbiol Lett. 1993 Jul 1;110(3):335–339. doi: 10.1111/j.1574-6968.1993.tb06345.x. [DOI] [PubMed] [Google Scholar]
  31. Conley E. C., Saunders J. R. Recombination-dependent recircularization of linearized pBR322 plasmid DNA following transformation of Escherichia coli. Mol Gen Genet. 1984;194(1-2):211–218. doi: 10.1007/BF00383519. [DOI] [PubMed] [Google Scholar]
  32. Conley E. C., Saunders V. A., Saunders J. R. Deletion and rearrangement of plasmid DNA during transformation of Escherichia coli with linear plasmid molecules. Nucleic Acids Res. 1986 Nov 25;14(22):8905–8917. doi: 10.1093/nar/14.22.8905. [DOI] [PMC free article] [PubMed] [Google Scholar]
  33. Contente S., Dubnau D. Characterization of plasmid transformation in Bacillus subtilis: kinetic properties and the effect of DNA conformation. Mol Gen Genet. 1979 Jan 2;167(3):251–258. doi: 10.1007/BF00267416. [DOI] [PubMed] [Google Scholar]
  34. Contente S., Dubnau D. Marker rescue transformation by linear plasmid DNA in Bacillus subtilis. Plasmid. 1979 Oct;2(4):555–571. doi: 10.1016/0147-619x(79)90054-4. [DOI] [PubMed] [Google Scholar]
  35. Costerton J. W., Cheng K. J., Geesey G. G., Ladd T. I., Nickel J. C., Dasgupta M., Marrie T. J. Bacterial biofilms in nature and disease. Annu Rev Microbiol. 1987;41:435–464. doi: 10.1146/annurev.mi.41.100187.002251. [DOI] [PubMed] [Google Scholar]
  36. Coughter J. P., Stewart G. J. Genetic exchange in the environment. Antonie Van Leeuwenhoek. 1989;55(1):15–22. doi: 10.1007/BF02309615. [DOI] [PubMed] [Google Scholar]
  37. Courtois J., Courtois B., Guillaume J. High-frequency transformation of Rhizobium meliloti. J Bacteriol. 1988 Dec;170(12):5925–5927. doi: 10.1128/jb.170.12.5925-5927.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  38. Coyne J. A. Genetics and speciation. Nature. 1992 Feb 6;355(6360):511–515. doi: 10.1038/355511a0. [DOI] [PubMed] [Google Scholar]
  39. Crabb W. D., Streips U. N., Doyle R. J. Selective enrichment for genetic markers in DNA released by competent cultures of Bacillus subtilis. Mol Gen Genet. 1977 Oct 20;155(2):179–183. doi: 10.1007/BF00393157. [DOI] [PubMed] [Google Scholar]
  40. Daniell H., McFadden B. A. Characterization of DNA uptake by the cyanobacterium Anacystis nidulans. Mol Gen Genet. 1986 Aug;204(2):243–248. doi: 10.1007/BF00425505. [DOI] [PubMed] [Google Scholar]
  41. Danner D. B., Smith H. O., Narang S. A. Construction of DNA recognition sites active in Haemophilus transformation. Proc Natl Acad Sci U S A. 1982 Apr;79(7):2393–2397. doi: 10.1073/pnas.79.7.2393. [DOI] [PMC free article] [PubMed] [Google Scholar]
  42. Deflaun M. F., Paul J. H., Davis D. Simplified method for dissolved DNA determination in aquatic environments. Appl Environ Microbiol. 1986 Oct;52(4):654–659. doi: 10.1128/aem.52.4.654-659.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
  43. Deich R. A., Smith H. O. Mechanism of homospecific DNA uptake in Haemophilus influenzae transformation. Mol Gen Genet. 1980 Feb;177(3):369–374. doi: 10.1007/BF00271475. [DOI] [PubMed] [Google Scholar]
  44. Devilly C. I., Houghton J. A. A study of genetic transformation in Gloeocapsa alpicola. J Gen Microbiol. 1977 Jan;98(1):277–280. doi: 10.1099/00221287-98-1-277. [DOI] [PubMed] [Google Scholar]
  45. Doran J. L., Bingle W. H., Roy K. L., Hiratsuka K., Page W. J. Plasmid transformation of Azotobacter vinelandii OP. J Gen Microbiol. 1987 Aug;133(8):2059–2072. doi: 10.1099/00221287-133-8-2059. [DOI] [PubMed] [Google Scholar]
  46. Doran J. L., Page W. J. Heat sensitivity of Azotobacter vinelandii genetic transformation. J Bacteriol. 1983 Jul;155(1):159–168. doi: 10.1128/jb.155.1.159-168.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
  47. Dorward D. W., Garon C. F. DNA Is Packaged within Membrane-Derived Vesicles of Gram-Negative but Not Gram-Positive Bacteria. Appl Environ Microbiol. 1990 Jun;56(6):1960–1962. doi: 10.1128/aem.56.6.1960-1962.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  48. Dorward D. W., Garon C. F., Judd R. C. Export and intercellular transfer of DNA via membrane blebs of Neisseria gonorrhoeae. J Bacteriol. 1989 May;171(5):2499–2505. doi: 10.1128/jb.171.5.2499-2505.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
  49. Dowson C. G., Hutchison A., Brannigan J. A., George R. C., Hansman D., Liñares J., Tomasz A., Smith J. M., Spratt B. G. Horizontal transfer of penicillin-binding protein genes in penicillin-resistant clinical isolates of Streptococcus pneumoniae. Proc Natl Acad Sci U S A. 1989 Nov;86(22):8842–8846. doi: 10.1073/pnas.86.22.8842. [DOI] [PMC free article] [PubMed] [Google Scholar]
  50. Dowson C. G., Hutchison A., Woodford N., Johnson A. P., George R. C., Spratt B. G. Penicillin-resistant viridans streptococci have obtained altered penicillin-binding protein genes from penicillin-resistant strains of Streptococcus pneumoniae. Proc Natl Acad Sci U S A. 1990 Aug;87(15):5858–5862. doi: 10.1073/pnas.87.15.5858. [DOI] [PMC free article] [PubMed] [Google Scholar]
  51. DuBose R. F., Dykhuizen D. E., Hartl D. L. Genetic exchange among natural isolates of bacteria: recombination within the phoA gene of Escherichia coli. Proc Natl Acad Sci U S A. 1988 Sep;85(18):7036–7040. doi: 10.1073/pnas.85.18.7036. [DOI] [PMC free article] [PubMed] [Google Scholar]
  52. Dubnau D., Davidoff-Abelson R., Scher B., Cirigliano C. Fate of transforming deoxyribonucleic acid after uptake by competent Bacillus subtilis: phenotypic characterization of radiation-sensitive recombination-deficient mutants. J Bacteriol. 1973 Apr;114(1):273–286. doi: 10.1128/jb.114.1.273-286.1973. [DOI] [PMC free article] [PubMed] [Google Scholar]
  53. Dubnau D. Genetic competence in Bacillus subtilis. Microbiol Rev. 1991 Sep;55(3):395–424. doi: 10.1128/mr.55.3.395-424.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  54. Dubnau D., Smith I., Morell P., Marmur J. Gene conservation in Bacillus species. I. Conserved genetic and nucleic acid base sequence homologies. Proc Natl Acad Sci U S A. 1965 Aug;54(2):491–498. doi: 10.1073/pnas.54.2.491. [DOI] [PMC free article] [PubMed] [Google Scholar]
  55. Dubnau D. The regulation of genetic competence in Bacillus subtilis. Mol Microbiol. 1991 Jan;5(1):11–18. doi: 10.1111/j.1365-2958.1991.tb01820.x. [DOI] [PubMed] [Google Scholar]
  56. Eisenstark A., Miller C., Jones J., Levén S. Escherichia coli genes involved in cell survival during dormancy: role of oxidative stress. Biochem Biophys Res Commun. 1992 Nov 16;188(3):1054–1059. doi: 10.1016/0006-291x(92)91338-q. [DOI] [PubMed] [Google Scholar]
  57. Essich E., Stevens S. E., Jr, Porter R. D. Chromosomal transformation in the cyanobacterium Agmenellum quadruplicatum. J Bacteriol. 1990 Apr;172(4):1916–1922. doi: 10.1128/jb.172.4.1916-1922.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  58. Feavers I. M., Heath A. B., Bygraves J. A., Maiden M. C. Role of horizontal genetic exchange in the antigenic variation of the class 1 outer membrane protein of Neisseria meningitidis. Mol Microbiol. 1992 Feb;6(4):489–495. doi: 10.1111/j.1365-2958.1992.tb01493.x. [DOI] [PubMed] [Google Scholar]
  59. Fibi M. R., Bröker M., Schulz R., Johannsen R., Zettlmeissl G. Inactivation of recombinant plasmid DNA from a human erythropoietin-producing mouse cell line grown on a large scale. Appl Microbiol Biotechnol. 1991 Aug;35(5):622–630. doi: 10.1007/BF00169627. [DOI] [PubMed] [Google Scholar]
  60. Fitzmaurice W. P., Benjamin R. C., Huang P. C., Scocca J. J. Characterization of recognition sites on bacteriophage HP1c1 DNA which interact with the DNA uptake system of Haemophilus influenzae Rd. Gene. 1984 Nov;31(1-3):187–196. doi: 10.1016/0378-1119(84)90209-9. [DOI] [PubMed] [Google Scholar]
  61. Frischer M. E., Thurmond J. M., Paul J. H. Natural plasmid transformation in a high-frequency-of-transformation marine Vibrio strain. Appl Environ Microbiol. 1990 Nov;56(11):3439–3444. doi: 10.1128/aem.56.11.3439-3444.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  62. Frosch M., Meyer T. F. Transformation-mediated exchange of virulence determinants by co-cultivation of pathogenic Neisseriae. FEMS Microbiol Lett. 1992 Dec 15;100(1-3):345–349. doi: 10.1111/j.1574-6968.1992.tb14062.x. [DOI] [PubMed] [Google Scholar]
  63. Fuhrman J. A., Comeau D. E., Hagström A., Chan A. M. Extraction from natural planktonic microorganisms of DNA suitable for molecular biological studies. Appl Environ Microbiol. 1988 Jun;54(6):1426–1429. doi: 10.1128/aem.54.6.1426-1429.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  64. Garcia E., Lopez P., Ureña M. T., Espinosa M. Early stages in Bacillus subtilis transformation: association between homologous DNA and surface structures. J Bacteriol. 1978 Sep;135(3):731–740. doi: 10.1128/jb.135.3.731-740.1978. [DOI] [PMC free article] [PubMed] [Google Scholar]
  65. Gasc A. M., Garcia P., Baty D., Sicard A. M. Mismatch repair during pneumococcal transformation of small deletions produced by site-directed mutagenesis. Mol Gen Genet. 1987 Dec;210(2):369–372. doi: 10.1007/BF00325708. [DOI] [PubMed] [Google Scholar]
  66. Gasc A. M., Sicard A. M., Claverys J. P. Repair of single- and multiple-substitution mismatches during recombination in Streptococcus pneumoniae. Genetics. 1989 Jan;121(1):29–36. doi: 10.1093/genetics/121.1.29. [DOI] [PMC free article] [PubMed] [Google Scholar]
  67. Glick B. R., Brooks H. E., Pasternak J. J. Transformation of Azotobacter vinelandii with plasmid DNA. J Bacteriol. 1985 Apr;162(1):276–279. doi: 10.1128/jb.162.1.276-279.1985. [DOI] [PMC free article] [PubMed] [Google Scholar]
  68. Goldberg I. D., Gwinn D. D., Thorne C. B. Interspecies transformation between Bacillus subtilis and Bacillus licheniformis. Biochem Biophys Res Commun. 1966 May 25;23(4):543–548. [PubMed] [Google Scholar]
  69. Golden S. S., Sherman L. A. Optimal conditions for genetic transformation of the cyanobacterium Anacystis nidulans R2. J Bacteriol. 1984 Apr;158(1):36–42. doi: 10.1128/jb.158.1.36-42.1984. [DOI] [PMC free article] [PubMed] [Google Scholar]
  70. Goodgal S. H. DNA uptake in Haemophilus transformation. Annu Rev Genet. 1982;16:169–192. doi: 10.1146/annurev.ge.16.120182.001125. [DOI] [PubMed] [Google Scholar]
  71. Goodman S. D., Scocca J. J. Identification and arrangement of the DNA sequence recognized in specific transformation of Neisseria gonorrhoeae. Proc Natl Acad Sci U S A. 1988 Sep;85(18):6982–6986. doi: 10.1073/pnas.85.18.6982. [DOI] [PMC free article] [PubMed] [Google Scholar]
  72. Graham J. B., Istock C. A. Genetic exchange in Bacillus subtilis in soil. Mol Gen Genet. 1978 Nov 9;166(3):287–290. doi: 10.1007/BF00267620. [DOI] [PubMed] [Google Scholar]
  73. Graham J. P., Istock C. A. Gene exchange and natural selection cause Bacillus subtilis to evolve in soil culture. Science. 1979 May 11;204(4393):637–639. doi: 10.1126/science.107592. [DOI] [PubMed] [Google Scholar]
  74. Graves J. F., Biswas G. D., Sparling P. F. Sequence-specific DNA uptake in transformation of Neisseria gonorrhoeae. J Bacteriol. 1982 Dec;152(3):1071–1077. doi: 10.1128/jb.152.3.1071-1077.1982. [DOI] [PMC free article] [PubMed] [Google Scholar]
  75. Greaves M. P., Webley D. M. A study of the breakdown of organic phosphates by micro-organisms from the root region of certain pasture grasses. J Appl Bacteriol. 1965 Dec;28(3):454–465. doi: 10.1111/j.1365-2672.1965.tb02176.x. [DOI] [PubMed] [Google Scholar]
  76. Grist R. W., Butler L. O. Effect of transforming DNA on growth and frequency of mutation of Streptococcus pneumoniae. J Bacteriol. 1983 Jan;153(1):153–162. doi: 10.1128/jb.153.1.153-162.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
  77. Groisman E. A., Saier M. H., Jr, Ochman H. Horizontal transfer of a phosphatase gene as evidence for mosaic structure of the Salmonella genome. EMBO J. 1992 Apr;11(4):1309–1316. doi: 10.1002/j.1460-2075.1992.tb05175.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  78. Gromkova R., Goodgal S. Transformation by plasmid and chromosomal DNAs in Haemophilus parainfluenzae. Biochem Biophys Res Commun. 1979 Jun 27;88(4):1428–1434. doi: 10.1016/0006-291x(79)91139-2. [DOI] [PubMed] [Google Scholar]
  79. Gromkova R., Goodgal S. Uptake of plasmid deoxyribonucleic acid by Haemophilus. J Bacteriol. 1981 Apr;146(1):79–84. doi: 10.1128/jb.146.1.79-84.1981. [DOI] [PMC free article] [PubMed] [Google Scholar]
  80. Gryczan T. J., Contente S., Dubnau D. Characterization of Staphylococcus aureus plasmids introduced by transformation into Bacillus subtilis. J Bacteriol. 1978 Apr;134(1):318–329. doi: 10.1128/jb.134.1.318-329.1978. [DOI] [PMC free article] [PubMed] [Google Scholar]
  81. Guild W. R., Shoemaker N. B. Mismatch correction in pneumococcal transformation: donor length and hex-dependent marker efficiency. J Bacteriol. 1976 Jan;125(1):125–135. doi: 10.1128/jb.125.1.125-135.1976. [DOI] [PMC free article] [PubMed] [Google Scholar]
  82. Haas R., Meyer T. F., van Putten J. P. Aflagellated mutants of Helicobacter pylori generated by genetic transformation of naturally competent strains using transposon shuttle mutagenesis. Mol Microbiol. 1993 May;8(4):753–760. doi: 10.1111/j.1365-2958.1993.tb01618.x. [DOI] [PubMed] [Google Scholar]
  83. Hahn J., Albano M., Dubnau D. Isolation and characterization of Tn917lac-generated competence mutants of Bacillus subtilis. J Bacteriol. 1987 Jul;169(7):3104–3109. doi: 10.1128/jb.169.7.3104-3109.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  84. Hahn J., Inamine G., Kozlov Y., Dubnau D. Characterization of comE, a late competence operon of Bacillus subtilis required for the binding and uptake of transforming DNA. Mol Microbiol. 1993 Oct;10(1):99–111. doi: 10.1111/j.1365-2958.1993.tb00907.x. [DOI] [PubMed] [Google Scholar]
  85. Harford N., Mergeay M. Interspecific transformation of rifampicin resistance in the genus Bacillus. Mol Gen Genet. 1973 Jan 24;120(2):151–155. doi: 10.1007/BF00267243. [DOI] [PubMed] [Google Scholar]
  86. Harris-Warrick R. M., Lederberg J. Interspecies transformation in Bacillus: sequence heterology as the major barrier. J Bacteriol. 1978 Mar;133(3):1237–1245. doi: 10.1128/jb.133.3.1237-1245.1978. [DOI] [PMC free article] [PubMed] [Google Scholar]
  87. Harris W. J., Barr G. C. Structural features of DNA in competent Bacillus subtilis. Mol Gen Genet. 1971;113(4):316–330. doi: 10.1007/BF00272332. [DOI] [PubMed] [Google Scholar]
  88. Hassani M., Pincus D. H., Bennett G. N., Hirshfield I. N. Temperature-dependent induction of an acid-inducible stimulon of Escherichia coli in broth. Appl Environ Microbiol. 1992 Aug;58(8):2704–2707. doi: 10.1128/aem.58.8.2704-2707.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  89. Heinemann J. A. Genetics of gene transfer between species. Trends Genet. 1991 Jun;7(6):181–185. doi: 10.1016/0168-9525(91)90433-q. [DOI] [PubMed] [Google Scholar]
  90. Henschke R. B., Henschke E. J., Schmidt F. R. Monitoring survival and gene transfer in soil microcosms of recombinant Escherichia coli designed to represent an industrial production strain. Appl Microbiol Biotechnol. 1991 May;35(2):247–252. doi: 10.1007/BF00184696. [DOI] [PubMed] [Google Scholar]
  91. Herdman M. Mutations arising during transformation in the blue-green alga Anacystis nidulans. Mol Gen Genet. 1973;120(4):369–378. doi: 10.1007/BF00268150. [DOI] [PubMed] [Google Scholar]
  92. Herrick J. B., Madsen E. L., Batt C. A., Ghiorse W. C. Polymerase chain reaction amplification of naphthalene-catabolic and 16S rRNA gene sequences from indigenous sediment bacteria. Appl Environ Microbiol. 1993 Mar;59(3):687–694. doi: 10.1128/aem.59.3.687-694.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  93. Hoelzer M. A., Michod R. E. DNA repair and the evolution of transformation in Bacillus subtilis. III. Sex with damaged DNA. Genetics. 1991 Jun;128(2):215–223. doi: 10.1093/genetics/128.2.215. [DOI] [PMC free article] [PubMed] [Google Scholar]
  94. Holben William E., Jansson Janet K., Chelm Barry K., Tiedje James M. DNA Probe Method for the Detection of Specific Microorganisms in the Soil Bacterial Community. Appl Environ Microbiol. 1988 Mar;54(3):703–711. doi: 10.1128/aem.54.3.703-711.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  95. Hoyer L. L., Hamilton A. C., Steenbergen S. M., Vimr E. R. Cloning, sequencing and distribution of the Salmonella typhimurium LT2 sialidase gene, nanH, provides evidence for interspecies gene transfer. Mol Microbiol. 1992 Apr;6(7):873–884. doi: 10.1111/j.1365-2958.1992.tb01538.x. [DOI] [PubMed] [Google Scholar]
  96. Hui F. M., Morrison D. A. Genetic transformation in Streptococcus pneumoniae: nucleotide sequence analysis shows comA, a gene required for competence induction, to be a member of the bacterial ATP-dependent transport protein family. J Bacteriol. 1991 Jan;173(1):372–381. doi: 10.1128/jb.173.1.372-381.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  97. Husmark U., Rönner U. Forces involved in adhesion of Bacillus cereus spores to solid surfaces under different environmental conditions. J Appl Bacteriol. 1990 Oct;69(4):557–562. doi: 10.1111/j.1365-2672.1990.tb01548.x. [DOI] [PubMed] [Google Scholar]
  98. Iriberri J., Unanue M., Barcina I., Egea L. Seasonal variation in population density and heterotrophic activity of attached and free-living bacteria in coastal waters. Appl Environ Microbiol. 1987 Oct;53(10):2308–2314. doi: 10.1128/aem.53.10.2308-2314.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  99. Istock C. A., Duncan K. E., Ferguson N., Zhou X. Sexuality in a natural population of bacteria--Bacillus subtilis challenges the clonal paradigm. Mol Ecol. 1992 Aug;1(2):95–103. doi: 10.1111/j.1365-294x.1992.tb00161.x. [DOI] [PubMed] [Google Scholar]
  100. Jolliffe L. K., Doyle R. J., Streips U. N. The energized membrane and cellular autolysis in Bacillus subtilis. Cell. 1981 Sep;25(3):753–763. doi: 10.1016/0092-8674(81)90183-5. [DOI] [PubMed] [Google Scholar]
  101. Juni E. Genetic transformation assays for identification of strains of Moraxella urethralis. J Clin Microbiol. 1977 Feb;5(2):227–235. doi: 10.1128/jcm.5.2.227-235.1977. [DOI] [PMC free article] [PubMed] [Google Scholar]
  102. Juni E., Heym G. A., Newcomb R. D. Identification of Moraxella bovis by qualitative genetic transformation and nutritional assays. Appl Environ Microbiol. 1988 May;54(5):1304–1306. doi: 10.1128/aem.54.5.1304-1306.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  103. Juni E., Heym G. A. Transformation assay for identification of psychrotrophic achromobacters. Appl Environ Microbiol. 1980 Dec;40(6):1106–1114. doi: 10.1128/aem.40.6.1106-1114.1980. [DOI] [PMC free article] [PubMed] [Google Scholar]
  104. Juni E. Interspecies transformation of Acinetobacter: genetic evidence for a ubiquitous genus. J Bacteriol. 1972 Nov;112(2):917–931. doi: 10.1128/jb.112.2.917-931.1972. [DOI] [PMC free article] [PubMed] [Google Scholar]
  105. Juni E., Janik A. Transformation of Acinetobacter calco-aceticus (Bacterium anitratum). J Bacteriol. 1969 Apr;98(1):281–288. doi: 10.1128/jb.98.1.281-288.1969. [DOI] [PMC free article] [PubMed] [Google Scholar]
  106. Juni E. Simple genetic transformation assay for rapid diagnosis of Moraxella osloensis. Appl Microbiol. 1974 Jan;27(1):16–24. doi: 10.1128/am.27.1.16-24.1974. [DOI] [PMC free article] [PubMed] [Google Scholar]
  107. Kahn M. E., Barany F., Smith H. O. Transformasomes: specialized membranous structures that protect DNA during Haemophilus transformation. Proc Natl Acad Sci U S A. 1983 Nov;80(22):6927–6931. doi: 10.1073/pnas.80.22.6927. [DOI] [PMC free article] [PubMed] [Google Scholar]
  108. Kammen H. O., Wojnar R. J., Canellakis E. S. Transformation in Bacillus subtilis. II. The development and maintenance of the competent state. Biochim Biophys Acta. 1966 Jul 20;123(1):56–65. [PubMed] [Google Scholar]
  109. Kaprelyants A. S., Gottschal J. C., Kell D. B. Dormancy in non-sporulating bacteria. FEMS Microbiol Rev. 1993 Apr;10(3-4):271–285. doi: 10.1111/j.1574-6968.1993.tb05871.x. [DOI] [PubMed] [Google Scholar]
  110. Kathariou S., Stephens D. S., Spellman P., Morse S. A. Transposition of Tn916 to different sites in the chromosome of Neisseria meningitidis: a genetic tool for meningococcal mutagenesis. Mol Microbiol. 1990 May;4(5):729–735. doi: 10.1111/j.1365-2958.1990.tb00643.x. [DOI] [PubMed] [Google Scholar]
  111. Kauc L., Goodgal S. H. Introduction of transposon Tn916 DNA into Haemophilus influenzae and Haemophilus parainfluenzae. J Bacteriol. 1989 Dec;171(12):6625–6628. doi: 10.1128/jb.171.12.6625-6628.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
  112. Khanna M., Stotzky G. Transformation of Bacillus subtilis by DNA bound on montmorillonite and effect of DNase on the transforming ability of bound DNA. Appl Environ Microbiol. 1992 Jun;58(6):1930–1939. doi: 10.1128/aem.58.6.1930-1939.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  113. Khasanov F. K., Zvingila D. J., Zainullin A. A., Prozorov A. A., Bashkirov V. I. Homologous recombination between plasmid and chromosomal DNA in Bacillus subtilis requires approximately 70 bp of homology. Mol Gen Genet. 1992 Sep;234(3):494–497. doi: 10.1007/BF00538711. [DOI] [PubMed] [Google Scholar]
  114. King S. R., Richardson J. P. Role of homology and pathway specificity for recombination between plasmids and bacteriophage lambda. Mol Gen Genet. 1986 Jul;204(1):141–147. doi: 10.1007/BF00330201. [DOI] [PubMed] [Google Scholar]
  115. Kjelleberg S., Albertson N., Flärdh K., Holmquist L., Jouper-Jaan A., Marouga R., Ostling J., Svenblad B., Weichart D. How do non-differentiating bacteria adapt to starvation? Antonie Van Leeuwenhoek. 1993;63(3-4):333–341. doi: 10.1007/BF00871228. [DOI] [PubMed] [Google Scholar]
  116. Kjelleberg S., Humphrey B. A., Marshall K. C. Initial phases of starvation and activity of bacteria at surfaces. Appl Environ Microbiol. 1983 Nov;46(5):978–984. doi: 10.1128/aem.46.5.978-984.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
  117. Kolowsky K. S., Williams J. G., Szalay A. A. Length of foreign DNA in chimeric plasmids determines the efficiency of its integration into the chromosome of the cyanobacterium Synechococcus R2. Gene. 1984 Mar;27(3):289–299. doi: 10.1016/0378-1119(84)90073-8. [DOI] [PubMed] [Google Scholar]
  118. Koyama Y., Hoshino T., Tomizuka N., Furukawa K. Genetic transformation of the extreme thermophile Thermus thermophilus and of other Thermus spp. J Bacteriol. 1986 Apr;166(1):338–340. doi: 10.1128/jb.166.1.338-340.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
  119. Kroll J. S., Moxon E. R. Capsulation in distantly related strains of Haemophilus influenzae type b: genetic drift and gene transfer at the capsulation locus. J Bacteriol. 1990 Mar;172(3):1374–1379. doi: 10.1128/jb.172.3.1374-1379.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  120. Kuroda A., Rashid M. H., Sekiguchi J. Molecular cloning and sequencing of the upstream region of the major Bacillus subtilis autolysin gene: a modifier protein exhibiting sequence homology to the major autolysin and the spoIID product. J Gen Microbiol. 1992 Jun;138(6):1067–1076. doi: 10.1099/00221287-138-6-1067. [DOI] [PubMed] [Google Scholar]
  121. Lacks S. A., Mannarelli B. M., Springhorn S. S., Greenberg B. Genetic basis of the complementary DpnI and DpnII restriction systems of S. pneumoniae: an intercellular cassette mechanism. Cell. 1986 Sep 26;46(7):993–1000. doi: 10.1016/0092-8674(86)90698-7. [DOI] [PubMed] [Google Scholar]
  122. Lacks S. A., Springhorn S. S. Transfer of recombinant plasmids containing the gene for DpnII DNA methylase into strains of Streptococcus pneumoniae that produce DpnI or DpnII restriction endonucleases. J Bacteriol. 1984 Jun;158(3):905–909. doi: 10.1128/jb.158.3.905-909.1984. [DOI] [PMC free article] [PubMed] [Google Scholar]
  123. Lacks S., Greenberg B. Complementary specificity of restriction endonucleases of Diplococcus pneumoniae with respect to DNA methylation. J Mol Biol. 1977 Jul;114(1):153–168. doi: 10.1016/0022-2836(77)90289-3. [DOI] [PubMed] [Google Scholar]
  124. Lacks S., Greenberg B., Neuberger M. Identification of a deoxyribonuclease implicated in genetic transformation of Diplococcus pneumoniae. J Bacteriol. 1975 Jul;123(1):222–232. doi: 10.1128/jb.123.1.222-232.1975. [DOI] [PMC free article] [PubMed] [Google Scholar]
  125. Lacks S. Mutants of Diplococcus pneumoniae that lack deoxyribonucleases and other activities possibly pertinent to genetic transformation. J Bacteriol. 1970 Feb;101(2):373–383. doi: 10.1128/jb.101.2.373-383.1970. [DOI] [PMC free article] [PubMed] [Google Scholar]
  126. Larson T. G., Goodgal S. H. Sequence and transcriptional regulation of com101A, a locus required for genetic transformation in Haemophilus influenzae. J Bacteriol. 1991 Aug;173(15):4683–4691. doi: 10.1128/jb.173.15.4683-4691.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  127. Larson T. G., Roszczyk E., Goodgal S. H. Molecular cloning of two linked loci that increase the transformability of transformation-deficient mutants of Haemophilus influenzae. J Bacteriol. 1991 Aug;173(15):4675–4682. doi: 10.1128/jb.173.15.4675-4682.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  128. LeBlanc D. J., Hawley R. J., Lee L. N., St Martin E. J. "Conjugal" transfer of plasmid DNA among oral streptococci. Proc Natl Acad Sci U S A. 1978 Jul;75(7):3484–3487. doi: 10.1073/pnas.75.7.3484. [DOI] [PMC free article] [PubMed] [Google Scholar]
  129. Lefèvre J. C., Mostachfi P., Gasc A. M., Guillot E., Pasta F., Sicard M. Conversion of deletions during recombination in pneumococcal transformation. Genetics. 1989 Nov;123(3):455–464. doi: 10.1093/genetics/123.3.455. [DOI] [PMC free article] [PubMed] [Google Scholar]
  130. Li M., Stern B., Kamp D. Ultrafast plasmid DNA preparation for rapid transformation. Biotechniques. 1992 Nov;13(5):692–696. [PubMed] [Google Scholar]
  131. Long S. R. Rhizobium genetics. Annu Rev Genet. 1989;23:483–506. doi: 10.1146/annurev.ge.23.120189.002411. [DOI] [PubMed] [Google Scholar]
  132. Lopez P., Espinosa M., Stassi D. L., Lacks S. A. Facilitation of plasmid transfer in Streptococcus pneumoniae by chromosomal homology. J Bacteriol. 1982 May;150(2):692–701. doi: 10.1128/jb.150.2.692-701.1982. [DOI] [PMC free article] [PubMed] [Google Scholar]
  133. Lorenz M. G., Aardema B. W., Wackernagel W. Highly efficient genetic transformation of Bacillus subtilis attached to sand grains. J Gen Microbiol. 1988 Jan;134(1):107–112. doi: 10.1099/00221287-134-1-107. [DOI] [PubMed] [Google Scholar]
  134. Lorenz M. G., Gerjets D., Wackernagel W. Release of transforming plasmid and chromosomal DNA from two cultured soil bacteria. Arch Microbiol. 1991;156(4):319–326. doi: 10.1007/BF00263005. [DOI] [PubMed] [Google Scholar]
  135. Lorenz M. G., Reipschläger K., Wackernagel W. Plasmid transformation of naturally competent Acinetobacter calcoaceticus in non-sterile soil extract and groundwater. Arch Microbiol. 1992;157(4):355–360. doi: 10.1007/BF00248681. [DOI] [PubMed] [Google Scholar]
  136. Lorenz M. G., Wackernagel W. Adsorption of DNA to sand and variable degradation rates of adsorbed DNA. Appl Environ Microbiol. 1987 Dec;53(12):2948–2952. doi: 10.1128/aem.53.12.2948-2952.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  137. Lorenz M. G., Wackernagel W. High Frequency of Natural Genetic Transformation of Pseudomonas stutzeri in Soil Extract Supplemented with a Carbon/Energy and Phosphorus Source. Appl Environ Microbiol. 1991 Apr;57(4):1246–1251. doi: 10.1128/aem.57.4.1246-1251.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  138. Lorenz M. G., Wackernagel W. Natural genetic transformation of Pseudomonas stutzeri by sand-adsorbed DNA. Arch Microbiol. 1990;154(4):380–385. doi: 10.1007/BF00276535. [DOI] [PubMed] [Google Scholar]
  139. Lovett C. M., Jr, Love P. E., Yasbin R. E. Competence-specific induction of the Bacillus subtilis RecA protein analog: evidence for dual regulation of a recombination protein. J Bacteriol. 1989 May;171(5):2318–2322. doi: 10.1128/jb.171.5.2318-2322.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
  140. Marklund B. I., Tennent J. M., Garcia E., Hamers A., Båga M., Lindberg F., Gaastra W., Normark S. Horizontal gene transfer of the Escherichia coli pap and prs pili operons as a mechanism for the development of tissue-specific adhesive properties. Mol Microbiol. 1992 Aug;6(16):2225–2242. doi: 10.1111/j.1365-2958.1992.tb01399.x. [DOI] [PubMed] [Google Scholar]
  141. Marmur J., Seaman E., Levine J. INTERSPECIFIC TRANSFORMATION IN BACILLUS. J Bacteriol. 1963 Feb;85(2):461–467. doi: 10.1128/jb.85.2.461-467.1963. [DOI] [PMC free article] [PubMed] [Google Scholar]
  142. Mathis L. S., Scocca J. J. Haemophilus influenzae and Neisseria gonorrhoeae recognize different specificity determinants in the DNA uptake step of genetic transformation. J Gen Microbiol. 1982 May;128(5):1159–1161. doi: 10.1099/00221287-128-5-1159. [DOI] [PubMed] [Google Scholar]
  143. Matin A., Auger E. A., Blum P. H., Schultz J. E. Genetic basis of starvation survival in nondifferentiating bacteria. Annu Rev Microbiol. 1989;43:293–316. doi: 10.1146/annurev.mi.43.100189.001453. [DOI] [PubMed] [Google Scholar]
  144. Matin A. The molecular basis of carbon-starvation-induced general resistance in Escherichia coli. Mol Microbiol. 1991 Jan;5(1):3–10. doi: 10.1111/j.1365-2958.1991.tb01819.x. [DOI] [PubMed] [Google Scholar]
  145. Mazodier P., Davies J. Gene transfer between distantly related bacteria. Annu Rev Genet. 1991;25:147–171. doi: 10.1146/annurev.ge.25.120191.001051. [DOI] [PubMed] [Google Scholar]
  146. McCarthy D., Kupfer D. M. Electron microscopy of single-stranded structures in the DNA of competent Haemophilus influenzae cells. J Bacteriol. 1987 Feb;169(2):565–571. doi: 10.1128/jb.169.2.565-571.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  147. Mercenier A., Chassy B. M. Strategies for the development of bacterial transformation systems. Biochimie. 1988 Apr;70(4):503–517. doi: 10.1016/0300-9084(88)90086-7. [DOI] [PubMed] [Google Scholar]
  148. Meyer T. F., Gibbs C. P., Haas R. Variation and control of protein expression in Neisseria. Annu Rev Microbiol. 1990;44:451–477. doi: 10.1146/annurev.mi.44.100190.002315. [DOI] [PubMed] [Google Scholar]
  149. Michel B., Niaudet B., Ehrlich S. D. Intramolecular recombination during plasmid transformation of Bacillus subtilis competent cells. EMBO J. 1982;1(12):1565–1571. doi: 10.1002/j.1460-2075.1982.tb01356.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  150. Michod R. E., Wojciechowski M. F., Hoelzer M. A. DNA repair and the evolution of transformation in the bacterium Bacillus subtilis. Genetics. 1988 Jan;118(1):31–39. doi: 10.1093/genetics/118.1.31. [DOI] [PMC free article] [PubMed] [Google Scholar]
  151. Miller R. V., Kokjohn T. A. General microbiology of recA: environmental and evolutionary significance. Annu Rev Microbiol. 1990;44:365–394. doi: 10.1146/annurev.mi.44.100190.002053. [DOI] [PubMed] [Google Scholar]
  152. Modrich P. Mechanisms and biological effects of mismatch repair. Annu Rev Genet. 1991;25:229–253. doi: 10.1146/annurev.ge.25.120191.001305. [DOI] [PubMed] [Google Scholar]
  153. Mongold J. A. DNA repair and the evolution of transformation in Haemophilus influenzae. Genetics. 1992 Dec;132(4):893–898. doi: 10.1093/genetics/132.4.893. [DOI] [PMC free article] [PubMed] [Google Scholar]
  154. Morel P., Hejna J. A., Ehrlich S. D., Cassuto E. Antipairing and strand transferase activities of E. coli helicase II (UvrD). Nucleic Acids Res. 1993 Jul 11;21(14):3205–3209. doi: 10.1093/nar/21.14.3205. [DOI] [PMC free article] [PubMed] [Google Scholar]
  155. Morrison D. A., Guild W. R. Transformation and deoxyribonucleic acid size: extent of degradation on entry varies with size of donor. J Bacteriol. 1972 Dec;112(3):1157–1168. doi: 10.1128/jb.112.3.1157-1168.1972. [DOI] [PMC free article] [PubMed] [Google Scholar]
  156. Mottes M., Grandi G., Sgaramella V., Canosi U., Morelli G., Trautner T. A. Different specific activities of the monomeric and oligomeric forms of plasmid DNA in transformation of B. subtilis and E. coli. Mol Gen Genet. 1979 Jul 24;174(3):281–286. doi: 10.1007/BF00267800. [DOI] [PubMed] [Google Scholar]
  157. Msadek T., Kunst F., Klier A., Rapoport G. DegS-DegU and ComP-ComA modulator-effector pairs control expression of the Bacillus subtilis pleiotropic regulatory gene degQ. J Bacteriol. 1991 Apr;173(7):2366–2377. doi: 10.1128/jb.173.7.2366-2377.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  158. Mulder J. A., Venema G. Isolation and partial characterization of Bacillus subtilis mutants impaired in DNA entry. J Bacteriol. 1982 Apr;150(1):260–268. doi: 10.1128/jb.150.1.260-268.1982. [DOI] [PMC free article] [PubMed] [Google Scholar]
  159. Musser J. M., Hewlett E. L., Peppler M. S., Selander R. K. Genetic diversity and relationships in populations of Bordetella spp. J Bacteriol. 1986 Apr;166(1):230–237. doi: 10.1128/jb.166.1.230-237.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
  160. Médigue C., Rouxel T., Vigier P., Hénaut A., Danchin A. Evidence for horizontal gene transfer in Escherichia coli speciation. J Mol Biol. 1991 Dec 20;222(4):851–856. doi: 10.1016/0022-2836(91)90575-q. [DOI] [PubMed] [Google Scholar]
  161. Méjean V., Claverys J. P. DNA processing during entry in transformation of Streptococcus pneumoniae. J Biol Chem. 1993 Mar 15;268(8):5594–5599. [PubMed] [Google Scholar]
  162. Méjean V., Claverys J. P. Polarity of DNA entry in transformation of Streptococcus pneumoniae. Mol Gen Genet. 1988 Aug;213(2-3):444–448. doi: 10.1007/BF00339614. [DOI] [PubMed] [Google Scholar]
  163. Nestle M., Roberts W. K. An extracellular nuclease from Serratia marcescens. II. Specificity of the enzyme. J Biol Chem. 1969 Oct 10;244(19):5219–5225. [PubMed] [Google Scholar]
  164. Norgard M. V., Imaeda T. Physiological factors involved in the transformation of Mycobacterium smegmatis. J Bacteriol. 1978 Mar;133(3):1254–1262. doi: 10.1128/jb.133.3.1254-1262.1978. [DOI] [PMC free article] [PubMed] [Google Scholar]
  165. Novitsky J. A. Degradation of dead microbial biomass in a marine sediment. Appl Environ Microbiol. 1986 Sep;52(3):504–509. doi: 10.1128/aem.52.3.504-509.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
  166. Nyström T., Olsson R. M., Kjelleberg S. Survival, stress resistance, and alterations in protein expression in the marine vibrio sp. strain S14 during starvation for different individual nutrients. Appl Environ Microbiol. 1992 Jan;58(1):55–65. doi: 10.1128/aem.58.1.55-65.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  167. O'Connor M., Wopat A., Hanson R. S. Genetic transformation in Methylobacterium organophilum. J Gen Microbiol. 1977 Jan;98(1):265–272. doi: 10.1099/00221287-98-1-265. [DOI] [PubMed] [Google Scholar]
  168. O'Sullivan D. J., O'Gara F. Traits of fluorescent Pseudomonas spp. involved in suppression of plant root pathogens. Microbiol Rev. 1992 Dec;56(4):662–676. doi: 10.1128/mr.56.4.662-676.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  169. OTTOLENGHI E., HOTCHKISS R. D. Appearance of genetic transforming activity in pneumococcal cultures. Science. 1960 Oct 28;132(3435):1257–1258. [PubMed] [Google Scholar]
  170. Orrego C., Arnaud M., Halvorsen H. O. Bacillus subtilis 168 genetic transformation mediated by outgrowing spores: necessity for cell contact. J Bacteriol. 1978 Jun;134(3):973–981. doi: 10.1128/jb.134.3.973-981.1978. [DOI] [PMC free article] [PubMed] [Google Scholar]
  171. PERRY D., SLADE H. D. INTRASPECIFIC AND INTERSPECIFIC TRANSFORMATION IN STREPTOCOCCI. J Bacteriol. 1964 Sep;88:595–601. doi: 10.1128/jb.88.3.595-601.1964. [DOI] [PMC free article] [PubMed] [Google Scholar]
  172. Page W. J., Doran J. L. Recovery of competence in calcium-limited Azotobacter vinelandii. J Bacteriol. 1981 Apr;146(1):33–40. doi: 10.1128/jb.146.1.33-40.1981. [DOI] [PMC free article] [PubMed] [Google Scholar]
  173. Page W. J., Sadoff H. L. Control of transformation competence in Azotobacter vinelandii by nitrogen catabolite derepression. J Bacteriol. 1976 Mar;125(3):1088–1095. doi: 10.1128/jb.125.3.1088-1095.1976. [DOI] [PMC free article] [PubMed] [Google Scholar]
  174. Page W. J., Sadoff H. L. Physiological factors affecting transformation of Azotobacter vinelandii. J Bacteriol. 1976 Mar;125(3):1080–1087. doi: 10.1128/jb.125.3.1080-1087.1976. [DOI] [PMC free article] [PubMed] [Google Scholar]
  175. Page W. J., von Tigerstrom M. Induction of transformation competence in Azotobacter vinelandii iron-limited cultures. Can J Microbiol. 1978 Dec;24(12):1590–1594. doi: 10.1139/m78-254. [DOI] [PubMed] [Google Scholar]
  176. Page W. J., von Tigerstrom M. Optimal conditions for transformation of Azotobacter vinelandii. J Bacteriol. 1979 Sep;139(3):1058–1061. doi: 10.1128/jb.139.3.1058-1061.1979. [DOI] [PMC free article] [PubMed] [Google Scholar]
  177. Palmen R., Vosman B., Buijsman P., Breek C. K., Hellingwerf K. J. Physiological characterization of natural transformation in Acinetobacter calcoaceticus. J Gen Microbiol. 1993 Feb;139(2):295–305. doi: 10.1099/00221287-139-2-295. [DOI] [PubMed] [Google Scholar]
  178. Palmen R., Vosman B., Kok R., van der Zee J. R., Hellingwerf K. J. Characterization of transformation-deficient mutants of Acinetobacter calcoaceticus. Mol Microbiol. 1992 Jul;6(13):1747–1754. doi: 10.1111/j.1365-2958.1992.tb01347.x. [DOI] [PubMed] [Google Scholar]
  179. Paul J. H., Cazares L., Thurmond J. Amplification of the rbcL gene from dissolved and particulate DNA from aquatic environments. Appl Environ Microbiol. 1990 Jun;56(6):1963–1966. doi: 10.1128/aem.56.6.1963-1966.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  180. Paul J. H., David A. W. Production of extracellular nucleic acids by genetically altered bacteria in aquatic-environment microcosms. Appl Environ Microbiol. 1989 Aug;55(8):1865–1869. doi: 10.1128/aem.55.8.1865-1869.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
  181. Paul J. H., Deflaun M. F., Jeffrey W. H. Mechanisms of DNA utilization by estuarine microbial populations. Appl Environ Microbiol. 1988 Jul;54(7):1682–1688. doi: 10.1128/aem.54.7.1682-1688.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  182. Paul J. H., Frischer M. E., Thurmond J. M. Gene transfer in marine water column and sediment microcosms by natural plasmid transformation. Appl Environ Microbiol. 1991 May;57(5):1509–1515. doi: 10.1128/aem.57.5.1509-1515.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  183. Paul J. H., Jeffrey W. H., David A. W., Deflaun M. F., Cazares L. H. Turnover of extracellular DNA in eutrophic and oligotrophic freshwater environments of southwest Florida. Appl Environ Microbiol. 1989 Jul;55(7):1823–1828. doi: 10.1128/aem.55.7.1823-1828.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
  184. Paul J. H., Jeffrey W. H., DeFlaun M. F. Dynamics of extracellular DNA in the marine environment. Appl Environ Microbiol. 1987 Jan;53(1):170–179. doi: 10.1128/aem.53.1.170-179.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  185. Paul J. H., Pichard S. L. Specificity of Cellular DNA-Binding Sites of Microbial Populations in a Florida Reservoir. Appl Environ Microbiol. 1989 Nov;55(11):2798–2801. doi: 10.1128/aem.55.11.2798-2801.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
  186. Paul J. H., Thurmond J. M., Frischer M. E., Cannon J. P. Intergeneric natural plasmid transformation between E. coli and a marine Vibrio species. Mol Ecol. 1992 May;1(1):37–46. doi: 10.1111/j.1365-294x.1992.tb00153.x. [DOI] [PubMed] [Google Scholar]
  187. Paul John H., Deflaun Mary F., Jeffrey Wade H., David Andrew W. Seasonal and Diel Variability in Dissolved DNA and in Microbial Biomass and Activity in a Subtropical Estuary. Appl Environ Microbiol. 1988 Mar;54(3):718–727. doi: 10.1128/aem.54.3.718-727.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  188. Porteous L. A., Armstrong J. L. A simple mini-method to extract DNA directly from soil for use with polymerase chain reaction amplification. Curr Microbiol. 1993 Aug;27(2):115–118. doi: 10.1007/BF01570868. [DOI] [PubMed] [Google Scholar]
  189. Postel E. H., Goodgal S. H. Uptake of "single-stranded" DNA in Hemophilus influenzae and its ability to transform. J Mol Biol. 1966 Apr;16(2):317–327. doi: 10.1016/s0022-2836(66)80175-4. [DOI] [PubMed] [Google Scholar]
  190. Rayssiguier C., Thaler D. S., Radman M. The barrier to recombination between Escherichia coli and Salmonella typhimurium is disrupted in mismatch-repair mutants. Nature. 1989 Nov 23;342(6248):396–401. doi: 10.1038/342396a0. [DOI] [PubMed] [Google Scholar]
  191. Redfield R. J. Evolution of natural transformation: testing the DNA repair hypothesis in Bacillus subtilis and Haemophilus influenzae. Genetics. 1993 Apr;133(4):755–761. doi: 10.1093/genetics/133.4.755. [DOI] [PMC free article] [PubMed] [Google Scholar]
  192. Roberts M. S., Cohan F. M. The effect of DNA sequence divergence on sexual isolation in Bacillus. Genetics. 1993 Jun;134(2):401–408. doi: 10.1093/genetics/134.2.401. [DOI] [PMC free article] [PubMed] [Google Scholar]
  193. Robertson B. D., Meyer T. F. Genetic variation in pathogenic bacteria. Trends Genet. 1992 Dec;8(12):422–427. doi: 10.1016/0168-9525(92)90325-x. [DOI] [PubMed] [Google Scholar]
  194. Rochelle P. A., Day M. J., Fry J. C. Occurrence, transfer and mobilization in epilithic strains of Acinetobacter of mercury-resistance plasmids capable of transformation. J Gen Microbiol. 1988 Nov;134(11):2933–2941. doi: 10.1099/00221287-134-11-2933. [DOI] [PubMed] [Google Scholar]
  195. Roelants P., Konvalinkova V., Mergeay M., Lurquin P. F., Ledoux L. DNA uptake by Streptomyces species. Biochim Biophys Acta. 1976 Aug 2;442(1):117–122. doi: 10.1016/0005-2787(76)90182-9. [DOI] [PubMed] [Google Scholar]
  196. Romanowski G., Lorenz M. G., Sayler G., Wackernagel W. Persistence of free plasmid DNA in soil monitored by various methods, including a transformation assay. Appl Environ Microbiol. 1992 Sep;58(9):3012–3019. doi: 10.1128/aem.58.9.3012-3019.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  197. Romanowski G., Lorenz M. G., Wackernagel W. Adsorption of plasmid DNA to mineral surfaces and protection against DNase I. Appl Environ Microbiol. 1991 Apr;57(4):1057–1061. doi: 10.1128/aem.57.4.1057-1061.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  198. Romanowski G., Lorenz M. G., Wackernagel W. Plasmid DNA in a groundwater aquifer microcosm--adsorption, DNAase resistance and natural genetic transformation of Bacillus subtilis. Mol Ecol. 1993 Jun;2(3):171–181. doi: 10.1111/j.1365-294x.1993.tb00106.x. [DOI] [PubMed] [Google Scholar]
  199. Romanowski G., Lorenz M. G., Wackernagel W. Use of polymerase chain reaction and electroporation of Escherichia coli to monitor the persistence of extracellular plasmid DNA introduced into natural soils. Appl Environ Microbiol. 1993 Oct;59(10):3438–3446. doi: 10.1128/aem.59.10.3438-3446.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  200. Roszak D. B., Colwell R. R. Survival strategies of bacteria in the natural environment. Microbiol Rev. 1987 Sep;51(3):365–379. doi: 10.1128/mr.51.3.365-379.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  201. Rowji P., Gromkova R., Koornhof H. Genetic transformation in encapsulated clinical isolates of Haemophilus influenzae type b. J Gen Microbiol. 1989 Oct;135(10):2775–2782. doi: 10.1099/00221287-135-10-2775. [DOI] [PubMed] [Google Scholar]
  202. Rudin L., Sjöström J. E., Lindberg M., Philipson L. Factors affecting competence for transformation in Staphylococcus aureus. J Bacteriol. 1974 Apr;118(1):155–164. doi: 10.1128/jb.118.1.155-164.1974. [DOI] [PMC free article] [PubMed] [Google Scholar]
  203. Saunders C. W., Guild W. R. Monomer plasmid DNA transforms Streptococcus pneumoniae. Mol Gen Genet. 1981;181(1):57–62. doi: 10.1007/BF00339005. [DOI] [PubMed] [Google Scholar]
  204. Saunders C. W., Guild W. R. Properties and transforming activities of two plasmids in Streptococcus pneumoniae. Mol Gen Genet. 1980;180(3):573–578. doi: 10.1007/BF00268062. [DOI] [PubMed] [Google Scholar]
  205. Sayre P., Miller R. V. Bacterial mobile genetic elements: importance in assessing the environmental fate of genetically engineered sequences. Plasmid. 1991 Nov;26(3):151–171. doi: 10.1016/0147-619x(91)90040-4. [DOI] [PubMed] [Google Scholar]
  206. Selander R. K., Caugant D. A., Ochman H., Musser J. M., Gilmour M. N., Whittam T. S. Methods of multilocus enzyme electrophoresis for bacterial population genetics and systematics. Appl Environ Microbiol. 1986 May;51(5):873–884. doi: 10.1128/aem.51.5.873-884.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
  207. Selander R. K., McKinney R. M., Whittam T. S., Bibb W. F., Brenner D. J., Nolte F. S., Pattison P. E. Genetic structure of populations of Legionella pneumophila. J Bacteriol. 1985 Sep;163(3):1021–1037. doi: 10.1128/jb.163.3.1021-1037.1985. [DOI] [PMC free article] [PubMed] [Google Scholar]
  208. Shah G. R., Caufield P. W. Enhanced transformation of Streptococcus mutans by modifications in culture conditions. Anal Biochem. 1993 Oct;214(1):343–346. doi: 10.1006/abio.1993.1503. [DOI] [PubMed] [Google Scholar]
  209. Sharp P. M., Kelleher J. E., Daniel A. S., Cowan G. M., Murray N. E. Roles of selection and recombination in the evolution of type I restriction-modification systems in enterobacteria. Proc Natl Acad Sci U S A. 1992 Oct 15;89(20):9836–9840. doi: 10.1073/pnas.89.20.9836. [DOI] [PMC free article] [PubMed] [Google Scholar]
  210. Shen P., Huang H. V. Homologous recombination in Escherichia coli: dependence on substrate length and homology. Genetics. 1986 Mar;112(3):441–457. doi: 10.1093/genetics/112.3.441. [DOI] [PMC free article] [PubMed] [Google Scholar]
  211. Sherman L. A., van de Putte P. Construction of a hybrid plasmid capable of replication in the bacterium Escherichia coli and the cyanobacterium Anacystis nidulans. J Bacteriol. 1982 Apr;150(1):410–413. doi: 10.1128/jb.150.1.410-413.1982. [DOI] [PMC free article] [PubMed] [Google Scholar]
  212. Sherr B. F., Sherr E. B., Rassoulzadegan F. Rates of digestion of bacteria by marine phagotrophic protozoa: temperature dependence. Appl Environ Microbiol. 1988 May;54(5):1091–1095. doi: 10.1128/aem.54.5.1091-1095.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  213. Shestakov S. V., Khyen N. T. Evidence for genetic transformation in blue-green alga Anacystis nidulans. Mol Gen Genet. 1970;107(4):372–375. doi: 10.1007/BF00441199. [DOI] [PubMed] [Google Scholar]
  214. Singer J. T., van Tuijl J. J., Finnerty W. R. Transformation and mobilization of cloning vectors in Acinetobacter spp. J Bacteriol. 1986 Jan;165(1):301–303. doi: 10.1128/jb.165.1.301-303.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
  215. Sinha R. P., Iyer V. N. Competence for genetic transformation and the release of DNA from Bacillus subtilis. Biochim Biophys Acta. 1971 Feb 25;232(1):61–71. doi: 10.1016/0005-2787(71)90491-6. [DOI] [PubMed] [Google Scholar]
  216. Sisco K. L., Smith H. O. Sequence-specific DNA uptake in Haemophilus transformation. Proc Natl Acad Sci U S A. 1979 Feb;76(2):972–976. doi: 10.1073/pnas.76.2.972. [DOI] [PMC free article] [PubMed] [Google Scholar]
  217. Smith H. O., Danner D. B., Deich R. A. Genetic transformation. Annu Rev Biochem. 1981;50:41–68. doi: 10.1146/annurev.bi.50.070181.000353. [DOI] [PubMed] [Google Scholar]
  218. Smith J. M., Dowson C. G., Spratt B. G. Localized sex in bacteria. Nature. 1991 Jan 3;349(6304):29–31. doi: 10.1038/349029a0. [DOI] [PubMed] [Google Scholar]
  219. Smith J. M., Smith N. H., O'Rourke M., Spratt B. G. How clonal are bacteria? Proc Natl Acad Sci U S A. 1993 May 15;90(10):4384–4388. doi: 10.1073/pnas.90.10.4384. [DOI] [PMC free article] [PubMed] [Google Scholar]
  220. Smith M. W., Feng D. F., Doolittle R. F. Evolution by acquisition: the case for horizontal gene transfers. Trends Biochem Sci. 1992 Dec;17(12):489–493. doi: 10.1016/0968-0004(92)90335-7. [DOI] [PubMed] [Google Scholar]
  221. Somerville C. C., Knight I. T., Straube W. L., Colwell R. R. Simple, rapid method for direct isolation of nucleic acids from aquatic environments. Appl Environ Microbiol. 1989 Mar;55(3):548–554. doi: 10.1128/aem.55.3.548-554.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
  222. Souza V., Eguiarte L., Avila G., Cappello R., Gallardo C., Montoya J., Piñero D. Genetic Structure of Rhizobium etli biovar phaseoli Associated with Wild and Cultivated Bean Plants (Phaseolus vulgaris and Phaseolus coccineus) in Morelos, Mexico. Appl Environ Microbiol. 1994 Apr;60(4):1260–1268. doi: 10.1128/aem.60.4.1260-1268.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
  223. Souza V., Nguyen T. T., Hudson R. R., Piñero D., Lenski R. E. Hierarchical analysis of linkage disequilibrium in Rhizobium populations: evidence for sex? Proc Natl Acad Sci U S A. 1992 Sep 1;89(17):8389–8393. doi: 10.1073/pnas.89.17.8389. [DOI] [PMC free article] [PubMed] [Google Scholar]
  224. Sparling P. F. Genetic transformation of Neisseria gonorrhoeae to streptomycin resistance. J Bacteriol. 1966 Nov;92(5):1364–1371. doi: 10.1128/jb.92.5.1364-1371.1966. [DOI] [PMC free article] [PubMed] [Google Scholar]
  225. Spratt B. G. Hybrid penicillin-binding proteins in penicillin-resistant strains of Neisseria gonorrhoeae. Nature. 1988 Mar 10;332(6160):173–176. doi: 10.1038/332173a0. [DOI] [PubMed] [Google Scholar]
  226. Spratt B. G., Zhang Q. Y., Jones D. M., Hutchison A., Brannigan J. A., Dowson C. G. Recruitment of a penicillin-binding protein gene from Neisseria flavescens during the emergence of penicillin resistance in Neisseria meningitidis. Proc Natl Acad Sci U S A. 1989 Nov;86(22):8988–8992. doi: 10.1073/pnas.86.22.8988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  227. Steffan R. J., Atlas R. M. DNA amplification to enhance detection of genetically engineered bacteria in environmental samples. Appl Environ Microbiol. 1988 Sep;54(9):2185–2191. doi: 10.1128/aem.54.9.2185-2191.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  228. Steffan R. J., Goksøyr J., Bej A. K., Atlas R. M. Recovery of DNA from soils and sediments. Appl Environ Microbiol. 1988 Dec;54(12):2908–2915. doi: 10.1128/aem.54.12.2908-2915.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  229. Stein D. C., Gregoire S., Piekarowicz A. Restriction of plasmid DNA during transformation but not conjugation in Neisseria gonorrhoeae. Infect Immun. 1988 Jan;56(1):112–116. doi: 10.1128/iai.56.1.112-116.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  230. Stein D. C. Transformation of Neisseria gonorrhoeae: physical requirements of the transforming DNA. Can J Microbiol. 1991 May;37(5):345–349. doi: 10.1139/m91-056. [DOI] [PubMed] [Google Scholar]
  231. Stenström T. A. Bacterial hydrophobicity, an overall parameter for the measurement of adhesion potential to soil particles. Appl Environ Microbiol. 1989 Jan;55(1):142–147. doi: 10.1128/aem.55.1.142-147.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
  232. Stevens S. E., Jr, Porter R. D. Heterospecific transformation among cyanobacteria. J Bacteriol. 1986 Sep;167(3):1074–1076. doi: 10.1128/jb.167.3.1074-1076.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
  233. Stevens S. E., Porter R. D. Transformation in Agmenellum quadruplicatum. Proc Natl Acad Sci U S A. 1980 Oct;77(10):6052–6056. doi: 10.1073/pnas.77.10.6052. [DOI] [PMC free article] [PubMed] [Google Scholar]
  234. Stewart G. J., Carlson C. A., Ingraham J. L. Evidence for an active role of donor cells in natural transformation of Pseudomonas stutzeri. J Bacteriol. 1983 Oct;156(1):30–35. doi: 10.1128/jb.156.1.30-35.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
  235. Stewart G. J., Carlson C. A. The biology of natural transformation. Annu Rev Microbiol. 1986;40:211–235. doi: 10.1146/annurev.mi.40.100186.001235. [DOI] [PubMed] [Google Scholar]
  236. Stewart G. J., Sinigalliano C. D. Detection of horizontal gene transfer by natural transformation in native and introduced species of bacteria in marine and synthetic sediments. Appl Environ Microbiol. 1990 Jun;56(6):1818–1824. doi: 10.1128/aem.56.6.1818-1824.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  237. Stewart G. J., Sinigalliano C. D. Exchange of chromosomal markers by natural transformation between the soil isolate, Pseudomonas stutzeri JM300, and the marine isolate, Pseudomonas stutzeri strain ZoBell. Antonie Van Leeuwenhoek. 1991 Jan;59(1):19–25. doi: 10.1007/BF00582115. [DOI] [PubMed] [Google Scholar]
  238. Stotzky G., Babich H. Survival of, and genetic transfer by, genetically engineered bacteria in natural environments. Adv Appl Microbiol. 1986;31:93–138. doi: 10.1016/s0065-2164(08)70440-4. [DOI] [PubMed] [Google Scholar]
  239. Stotzky G., Devanas M. A., Zeph L. R. Methods for studying bacterial gene transfer in soil by conjugation and transduction. Adv Appl Microbiol. 1990;35:57–169. doi: 10.1016/s0065-2164(08)70243-0. [DOI] [PubMed] [Google Scholar]
  240. Streips U. N., Young F. E. Transformation in Bacillus subtilis using excreted DNA. Mol Gen Genet. 1974;133(1):47–55. doi: 10.1007/BF00268676. [DOI] [PubMed] [Google Scholar]
  241. Stuy J. H., Walter R. B. Homology-facilitated plasmid transfer in Haemophilus influenzae. Mol Gen Genet. 1986 May;203(2):288–295. doi: 10.1007/BF00333968. [DOI] [PubMed] [Google Scholar]
  242. TAKAHASHI I., GIBBONS N. E. Effect of salt concentration on the extracellular nucleic acids of Micrococcus halodenitrificans. Can J Microbiol. 1957 Aug;3(5):687–694. doi: 10.1139/m57-076. [DOI] [PubMed] [Google Scholar]
  243. TAKAHASHI I. Genetic transformation of Bacillus subtilis by extracellular DNA. Biochem Biophys Res Commun. 1962 Jun 4;7:467–470. doi: 10.1016/0006-291x(62)90337-6. [DOI] [PubMed] [Google Scholar]
  244. Te Riele H. P., Venema G. Molecular fate of heterologous bacterial DNA in competent Bacillus subtilis. II. Unstable association of heterologous DNA with the recipient chromosome. Genetics. 1982 Nov;102(3):329–340. doi: 10.1093/genetics/102.3.329. [DOI] [PMC free article] [PubMed] [Google Scholar]
  245. Tomasz A., Mosser J. L. On the nature of the pneumococcal activator substance. Proc Natl Acad Sci U S A. 1966 Jan;55(1):58–66. doi: 10.1073/pnas.55.1.58. [DOI] [PMC free article] [PubMed] [Google Scholar]
  246. Trombe M. C. Characterization of a calcium porter of Streptococcus pneumoniae involved in calcium regulation of growth and competence. J Gen Microbiol. 1993 Mar;139(3):433–439. doi: 10.1099/00221287-139-3-433. [DOI] [PubMed] [Google Scholar]
  247. Trombe M. C., Clavé C., Manias J. M. Calcium regulation of growth and differentiation in Streptococcus pneumoniae. J Gen Microbiol. 1992 Jan;138(1):77–84. doi: 10.1099/00221287-138-1-77. [DOI] [PubMed] [Google Scholar]
  248. Tsai Y. L., Olson B. H. Detection of low numbers of bacterial cells in soils and sediments by polymerase chain reaction. Appl Environ Microbiol. 1992 Feb;58(2):754–757. doi: 10.1128/aem.58.2.754-757.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  249. Tsai Y. L., Olson B. H. Rapid method for direct extraction of DNA from soil and sediments. Appl Environ Microbiol. 1991 Apr;57(4):1070–1074. doi: 10.1128/aem.57.4.1070-1074.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  250. Tsai Y. L., Olson B. H. Rapid method for separation of bacterial DNA from humic substances in sediments for polymerase chain reaction. Appl Environ Microbiol. 1992 Jul;58(7):2292–2295. doi: 10.1128/aem.58.7.2292-2295.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  251. Turk V., Rehnstam A. S., Lundberg E., Hagström A. Release of bacterial DNA by marine nanoflagellates, an intermediate step in phosphorus regeneration. Appl Environ Microbiol. 1992 Nov;58(11):3744–3750. doi: 10.1128/aem.58.11.3744-3750.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  252. Uozumi T., Hoshino T., Miwa K., Horinouchi S., Beppu T., Arima K. Restriction and modification in Bacillus species: genetic transformation of bacteria with DNA from different species, part I. Mol Gen Genet. 1977 Mar 28;152(1):65–69. doi: 10.1007/BF00264941. [DOI] [PubMed] [Google Scholar]
  253. Vosman B., Hellingwerf K. J. Molecular cloning and functional characterization of a recA analog from Pseudomonas stutzeri and construction of a P. stutzeri recA mutant. Antonie Van Leeuwenhoek. 1991 Feb;59(2):115–123. doi: 10.1007/BF00445655. [DOI] [PubMed] [Google Scholar]
  254. Walker G. C. Mutagenesis and inducible responses to deoxyribonucleic acid damage in Escherichia coli. Microbiol Rev. 1984 Mar;48(1):60–93. doi: 10.1128/mr.48.1.60-93.1984. [DOI] [PMC free article] [PubMed] [Google Scholar]
  255. Wang Y., Taylor D. E. Natural transformation in Campylobacter species. J Bacteriol. 1990 Feb;172(2):949–955. doi: 10.1128/jb.172.2.949-955.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  256. Weinrauch Y., Dubnau D. Plasmid marker rescue transformation in Bacillus subtilis. J Bacteriol. 1983 Jun;154(3):1077–1087. doi: 10.1128/jb.154.3.1077-1087.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
  257. Weller R., Weller J. W., Ward D. M. 16S rRNA sequences of uncultivated hot spring cyanobacterial mat inhabitants retrieved as randomly primed cDNA. Appl Environ Microbiol. 1991 Apr;57(4):1146–1151. doi: 10.1128/aem.57.4.1146-1151.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  258. Whittam T. S., Ochman H., Selander R. K. Multilocus genetic structure in natural populations of Escherichia coli. Proc Natl Acad Sci U S A. 1983 Mar;80(6):1751–1755. doi: 10.1073/pnas.80.6.1751. [DOI] [PMC free article] [PubMed] [Google Scholar]
  259. Williams J. G., Szalay A. A. Stable integration of foreign DNA into the chromosome of the cyanobacterium Synechococcus R2. Gene. 1983 Sep;24(1):37–51. doi: 10.1016/0378-1119(83)90129-4. [DOI] [PubMed] [Google Scholar]
  260. Wojciechowski M. F., Hoelzer M. A., Michod R. E. DNA repair and the evolution of transformation in Bacillus subtilis. II. Role of inducible repair. Genetics. 1989 Mar;121(3):411–422. doi: 10.1093/genetics/121.3.411. [DOI] [PMC free article] [PubMed] [Google Scholar]
  261. Worrell V. E., Nagle D. P., Jr, McCarthy D., Eisenbraun A. Genetic transformation system in the archaebacterium Methanobacterium thermoautotrophicum Marburg. J Bacteriol. 1988 Feb;170(2):653–656. doi: 10.1128/jb.170.2.653-656.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  262. YOUNG F. E., SPIZIZEN J. BIOCHEMICAL ASPECTS OF COMPETENCE IN THE BACILLUS SUBTILIS TRANSFORMATION SYSTEM. II. AUTOLYTIC ENZYME ACTIVITY OF CELL WALLS. J Biol Chem. 1963 Sep;238:3126–3130. [PubMed] [Google Scholar]
  263. Yankofsky S. A., Gurevich R., Grimland N., Stark A. A. Genetic transformation of obligately chemolithotrophic thiobacilli. J Bacteriol. 1983 Feb;153(2):652–657. doi: 10.1128/jb.153.2.652-657.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
  264. Yother J., McDaniel L. S., Briles D. E. Transformation of encapsulated Streptococcus pneumoniae. J Bacteriol. 1986 Dec;168(3):1463–1465. doi: 10.1128/jb.168.3.1463-1465.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
  265. Young C. C., Burghoff R. L., Keim L. G., Minak-Bernero V., Lute J. R., Hinton S. M. Polyvinylpyrrolidone-agarose gel electrophoresis purification of polymerase chain reaction-amplifiable DNA from soils. Appl Environ Microbiol. 1993 Jun;59(6):1972–1974. doi: 10.1128/aem.59.6.1972-1974.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  266. Youngman P. J., Perkins J. B., Losick R. Genetic transposition and insertional mutagenesis in Bacillus subtilis with Streptococcus faecalis transposon Tn917. Proc Natl Acad Sci U S A. 1983 Apr;80(8):2305–2309. doi: 10.1073/pnas.80.8.2305. [DOI] [PMC free article] [PubMed] [Google Scholar]
  267. Zhou J., Spratt B. G. Sequence diversity within the argF, fbp and recA genes of natural isolates of Neisseria meningitidis: interspecies recombination within the argF gene. Mol Microbiol. 1992 Aug;6(15):2135–2146. doi: 10.1111/j.1365-2958.1992.tb01387.x. [DOI] [PubMed] [Google Scholar]
  268. Zoon K. C., Habersat M., Scocca J. J. Synthesis of envelope polypeptides by Haemophilus influenzae during development of competence for genetic transformation. J Bacteriol. 1976 Jul;127(1):545–554. doi: 10.1128/jb.127.1.545-554.1976. [DOI] [PMC free article] [PubMed] [Google Scholar]
  269. Zoon K. C., Scocca J. J. Constitution of the cell envelope of Haemophilus influenzae in relation to competence for genetic transformation. J Bacteriol. 1975 Aug;123(2):666–677. doi: 10.1128/jb.123.2.666-677.1975. [DOI] [PMC free article] [PubMed] [Google Scholar]
  270. de Vos W. M., Venema G., Canosi U., Trautner T. A. Plasmid transformation in Bacillus subtilis: fate of plasmid DNA. Mol Gen Genet. 1981;181(4):424–433. doi: 10.1007/BF00428731. [DOI] [PubMed] [Google Scholar]
  271. te Riele H. P., Venema G. Molecular fate of heterologous bacterial DNA in competent Bacillus subtilis. I. Processing of B. pumilus and B. licheniformis DNA in B. subtilis. Genetics. 1982 Jun;101(2):179–188. doi: 10.1093/genetics/101.2.179. [DOI] [PMC free article] [PubMed] [Google Scholar]
  272. te Riele H. P., Venema G. Molecular fate of heterologous bacterial DNA in competent Bacillus subtilis: further characterization of unstable association between donor and recipient DNA and the involvement of the cellular membrane. Mol Gen Genet. 1984;195(1-2):200–208. doi: 10.1007/BF00332747. [DOI] [PubMed] [Google Scholar]
  273. van Loosdrecht M. C., Lyklema J., Norde W., Schraa G., Zehnder A. J. Electrophoretic mobility and hydrophobicity as a measured to predict the initial steps of bacterial adhesion. Appl Environ Microbiol. 1987 Aug;53(8):1898–1901. doi: 10.1128/aem.53.8.1898-1901.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  274. van Loosdrecht M. C., Lyklema J., Norde W., Schraa G., Zehnder A. J. The role of bacterial cell wall hydrophobicity in adhesion. Appl Environ Microbiol. 1987 Aug;53(8):1893–1897. doi: 10.1128/aem.53.8.1893-1897.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  275. van Loosdrecht M. C., Lyklema J., Norde W., Zehnder A. J. Influence of interfaces on microbial activity. Microbiol Rev. 1990 Mar;54(1):75–87. doi: 10.1128/mr.54.1.75-87.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  276. van den Hondel C. A., Verbeek S., van der Ende A., Weisbeek P. J., Borrias W. E., van Arkel G. A. Introduction of transposon Tn901 into a plasmid of Anacystis nidulans: preparation for cloning in cyanobacteria. Proc Natl Acad Sci U S A. 1980 Mar;77(3):1570–1574. doi: 10.1073/pnas.77.3.1570. [DOI] [PMC free article] [PubMed] [Google Scholar]

Articles from Microbiological Reviews are provided here courtesy of American Society for Microbiology (ASM)

RESOURCES