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. Author manuscript; available in PMC: 2013 Aug 1.
Published in final edited form as: Anal Chem. 2012 Jun 27;84(14):5845–5850. doi: 10.1021/ac300629p

Table 1.

Experimental Data Sets Summarya

instrument vendor samplea no. files precursor/fragment m/z toleranceb databases used for search
LTQ-XL Thermo Fisher BSA 280 1.25/0.5 RefSeq.BOVINE
LTQ-Orbitrap Thermo Fisher BSA 53 10*/0.5 RefSeq.BOVINE
HCT Ultra Bruker Daltonics BSA 24 1.25/0.5 RefSeq.BOVINE
QSTAR Elite AB SCIEX Bgal 23 100*/0.4 UniProt.ECOLI
TripleTOF 5600 AB SCIEX Bgal 60 50*/50* UniProt.ECOLI
LTQ-Velos Thermo Fisher yeast 5 1.25/0.5 SGD.orf_trans_all
a

BSA (bovine serum albumin) and Bgal (Escherichia coli β-galactosidase) were purchased as protein standards. Yeast reference materials were generated as part of the NCI CPTAC program. All samples were analyzed via LC-MS/MS experiments.

b

Asterisk denotes mass tolerances in parts-per-million.