Table 1. Study Information.
Study label | TLA | Tissue | N | N genes | PMID | Accession | Platform | Genotype |
CAP_LCL | CPL | LCLs | 480 | 18718 | 20339536 | GSE36868 | GPL6883-5509 | ILMN 310K & ILMN QUAD |
Stranger_LCL | STL | LCLs | 210 | 15752 | 17289997 | GSE6536 | GPL2507 | NA |
Harvard_cerebellum | HCE | cerebellum | 540 | 18263 | NA | syn4505 | GPL4372 | GPL14932 |
Harvard_prefrontal_cortex | HPC | prefrontal cortex | 678 | 18257 | NA | syn4505 | GPL4372 | GPL14932 |
Harvard_visual_cortex | HVC | visual cortex | 463 | 18263 | NA | syn4505 | GPL4372 | GPL14932 |
GenCord_fibroblast | GCF | blood fibroblasts | 83 | 16691 | 19644074 | GSE17080 | GPL6884 | GPL6982 |
GenCord_LCL | GCL | LCLs | 85 | 16691 | 19644074 | GSE17080 | GPL6884 | GPL6982 |
GenCord_tcell | GCT | blood t cells | 85 | 16691 | 19644074 | GSE17080 | GPL6884 | GPL6982 |
UChicago_liver | CLI | liver | 206 | 16236 | 21637794 | GSE26106 | GPL4133 | GPL8887 |
Merck_liver | MLI | liver | 266 | 18234 | 18462017 | GSE9588 | GPL4372 | GPL3720&GPL3718&GPL6987 |
Myers_brain | MBR | brain | 193 | 11707 | 17982457 | GSE8919 | GPL2700 | GPL3720&GPL3718 |
Accession numbers are from the GEO database when prefixed with GSE and from the Synapse database when prefixed with syn. Study label is the name used to refer to the study throughout the paper. TLA is the three letter acronym used to reference the study in figures. CAP stands for the Cholesterol and Pharmacogenetics Trial [55], [74].