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. 2013 Feb 25;24(2):104–116. doi: 10.1089/hgtb.2012.195

Table 1.

Nucleotide Sequence of the Mutation Primers Used for Site-Directed Mutagenesis in Adeno-Associated Virus Serotype 8 Capsid, and the Change in Nucleotide and Restriction Patterns of Silent Mutation Obtained with the Primers

Residue Sequence (5’ to 3’) Nucleotide change Change in restriction enzyme due tosilent mutation
S279A Wild-type primer sequence: AGCGCC SfcI disappears
  CTACTTCGGCTACAGCACCCCCTGGGGG    
  Mutant Primer Sequence:    
  CTACTTCGGCTACGCCACCCCCTGGGGG    
S501A Wild-type primer sequence: AGCGCC G→T AgeI appears
  GACAACCGGGCAAAACAACAATAGCAACTTTGCCTGGACT    
  Mutant primer sequence:    
  GACAACCGGTCAAAACAACAATGCCAACTTTGCCTGGACT    
S671A Wild-type primer sequence: TCTGCT T→A AluI disappears
  CCTTCAACCAGTCAAAGCTGAACTCTTTCATCACGCAATACA    
  Mutant primer sequence:    
  CCTTCAACCAGTCAAAGCAGAACGCTTTCATCACGCAATACA    
T252A Wild-type primer sequence: ACCGCC C→G NaeI appears
  ACCCGAACCTGGGCCCTGCCCACCTACAACAACCACCTCTAC    
  Mutant primer sequence:    
  ACCCGAACCTGGGCCCTGCCGGCCTACAACAACCACCTCTAC    
K137R Wild-type primer sequence: GGTTGAGGAAGGCGCTAAGACGGCTCCTGG AAGAGG C→G HhaI disappears
  Mutant primer sequence:    
  GGTTGAGGAAGGGGCTAGGACGGCTCCTGG