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. 2013 Aug 2;8(8):e69344. doi: 10.1371/journal.pone.0069344

Table 3. Overview of phylogenetic analyses.

Analysis Alignment of rRNA Data included nGen, ASDSF (ASDSF-rogue)1 Rogue taxa excluded2
Total evidence BAli-Phy BAli-Phy All3, incl. morphology 10M, 0.021 (N/A) (none)
Total evidence MAFFT MAFFT All3, incl. morphology 20M, 0.033 (0.031) Hemiptera, Dermaptera, Tiphiidae, Scolebythus, Mymaromma, Mymaromella
Molecular BAli-Phy BAli-Phy Molecular data3 20M, 0.014 (N/A) (none)
Molecular MAFFT MAFFT Molecular data3 30M, 0.014 (0.013) Coccobius, Scolia, Mymaromma, Mymaromella, Cephalonomia, Metapolybia, Chrysis
rRNA BAli-Phy 18S, 28S 10M, 0.029 (none)
rRNA MAFFT 18S, 28S 10M, 0.029 (0.027) Megalodontes, Thysanoptera, Hemiptera
Protein coding 12 n/a CAD3, POL3, EF1α-F13, EF1α-F13, CO13 25M, 0.036 (0.022) Notofenusa, Mymaromma, Pison, Chyphotes, Diplolepis, Myrmecopterina, Rhopalosoma, Ampulex
Protein coding 123 n/a CAD, POL, EF1α-F1, EF1α-F1, CO13 50M, 0.040 (0.037) Hesperapis, Megalyra, Psilocharis
Single gene: CAD n/a CAD 10M, 0.019 (0.012) Australomymar, Myrmecopterina
Single gene: POL n/a POL 20M, 0.018 n/a
Single gene: EF1α-F1 n/a EF1α-F1 100M, 0.098 n/a
Single gene: EF1α-F2 n/a EF1α-F2 100M, 0.093 n/a
Single gene: CO1 n/a CO13 20M, 0.013 n/a

1 Number of generations run, average standard deviation of split frequencies ASDSF, before and (in brackets) after removal of the rogue taxa.

2 Rogue taxa as identified by RogueNaRok, in descending order of impact according to the raw improvement of support after removal; taxa with at least 0.5 raw improvements are given.

3 Third codon position of protein-coding genes excluded from the analyses