Table 1.
Sequencing Details and Variant Calls in 27 Inbred Rat Strains
| Rat Strain | Gb of Bases Mappeda | Average Coveragea | Number of SNVsb | Number of Indelsb | Number of Structural Variantsb |
|---|---|---|---|---|---|
| ACI/EurMcwi | 86.64 | 33.69 | 3,607,275 | 1,168,780 | 17,859 |
| BBDP/Wor | 25.68 | 9.99 | 3,322,410 | 1,131,697 | 35,387 |
| BN.Lx | 58.40 | 22.71 | 51,938 | 45,404 | NA |
| F344/NCrl | 65.13 | 25.33 | 3,433,241 | 1,132,993 | 42,138 |
| FHH/EurMcwi | 57.98 | 22.55 | 3,471,696 | 1,170,337 | 22,628 |
| FHL/EurMcwi | 53.25 | 20.71 | 3,422,550 | 1,117,039 | 14,217 |
| GK/Ox | 75.25 | 29.26 | 3,584,504 | 1,147,996 | 58,877 |
| LE/Stm | 56.11 | 21.82 | 3,485,480 | 1,152,163 | 19,285 |
| LEW/NCrlBR | 51.06 | 19.86 | 2,966,945 | 1,014,796 | 39,031 |
| LEW/Crl | 66.30 | 25.78 | 2,941,368 | 1,002,364 | 39,146 |
| LH/MavRrrc | 55.84 | 21.71 | 3,459,239 | 1,189,791 | 21,901 |
| LL/MavRrrc | 58.04 | 22.57 | 3,419,697 | 1,177,989 | 20,623 |
| LN/MavRrrc | 56.54 | 21.99 | 3,406,103 | 1,171,795 | 20,561 |
| MHS/Gib | 64.68 | 25.15 | 3,270,047 | 1,112,526 | 23,551 |
| MNS/Gib | 57.26 | 22.27 | 3,278,667 | 1,123,980 | 22,769 |
| SBH/Ygl | 65.76 | 25.57 | 3,461,088 | 1,134,320 | 13,789 |
| SBN/Ygl | 47.17 | 18.34 | 3,334,857 | 1,078,851 | 9,586 |
| SHR/NHsd | 61.25 | 23.82 | 3,795,348 | 1,222,619 | 45,284 |
| SHR/OlaIpcv | 52.72 | 20.5 | 3,832,318 | 1,276,189 | 11,781 |
| SHRSP/Gla | 70.03 | 27.23 | 3,735,521 | 1,174,933 | 14,665 |
| SR/Jr | 50.28 | 19.55 | 3,421,364 | 1,140,725 | 36,798 |
| SS/JrHsdMcwi | 55.82 | 21.71 | 3,383,380 | 1,136,032 | 11,124 |
| SS/Jr | 51.42 | 19.99 | 3,377,708 | 1,110,653 | 38,535 |
| WAG/Rij | 53.58 | 20.84 | 3,167,781 | 1,084,318 | 51,423 |
| WKY/Gla | 68.17 | 26.51 | 3,819,860 | 1,234,622 | 11,310 |
| WKY/NHsd | 30.02 | 11.67 | 3,877,157 | 1,313,104 | 31,875 |
| WKY/NCrl | 63.77 | 24.8 | 3,718,449 | 1,250,041 | 45,788 |