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. 2004 Jan 14;32(1):328–337. doi: 10.1093/nar/gkh164

Table 2. Overview of the interaction datasets and the analysis: biological categories.

Category Reference URL No. ORFs covered No. of groups Description
Expression (47) http://171.65.26.52/yeast_cell_cycle/cellcycle.html 6130 13 Cell-cycle expression data using affymetrix
Protein size (48) http://www.yeastgenome.org/ 6092 12 Derived from genome sequence
Amino acid composition (33) http://us.expasy.org/tools/pscale/PolarityGrantham.html 6092 14 Derived from genome sequence
Subcellular localization (49) http://bioinfo.mbb.yale.edu/genome/localize/ 2902 4 transposon tagging
Function (22) http://mips.gsf.de/proj/yeast/CYGD/db/index.html 3936 2 MIPS Functional catalogs
Sequence conservation (50) http://www.ncbi.nlm.nih.gov/COG/ 4139 5 COG database
Tertiary structure (fold) (51) http://scop.mrc-lmb.cam.ac.uk/scop/ 3471 452 SCOP database
Fold class (51) http://scop.mrc-lmb.cam.ac.uk/scop/ 3471 7 SCOP database
Secondary structure (41) http://abs.cit.nih.gov/gor/ 6092 7 Predicted by GOR IV
Soluble protein versus membrane protein (40) http://www.cbs.dtu.dk/services/TMHMM/ 6092 14 Predicted by TMHMM server v 2.0