Table 1. Oligonucleotides prepared and used in this study.
Oligomer | Sequence 5′ → 3′a | Target site (exon 4) | Tm (°C)b | ESI-MSc, calc. | ESI-MSc, found |
---|---|---|---|---|---|
tc1 | pCTTAC′CACT* | 5′ss | 56.4 | 3281.4 | 3282.9 |
tc2 | pCCTTAC′CACTC* | 5′ss | 69.3 | 3935.8 | 3937.0 |
tc3 | pCCCTTAC′CACTCA | 5′ss | 77.4 | 4388.2 | 4389.0 |
tc4 | pACCCTTAC′CACTCAG | 5′ss | 83.2 | 5106.7 | 5107.6 |
tc5 | pACCCTTAA′CTCTCAG | 5′ss | 60.2 | 5121.7 | 5121.5 |
tc6 | pACCACC′CTGTCAA-FAM | 3′ss | – | 5035.0 | 5034.8 |
tcNS | pCATTATTGCCCTGAAAGa | – | – | 6210.2 | 6209.3 |
lna1 | CTTAC′CACT | 5′ss | 82.6 | 2942.5 | 2941.0 |
lna2 | CCTTAC′CACTC | 5′ss | ≈95 | 3605.3 | 3604.0 |
lna3 | CCCTTAC′CACTCA | 5′ss | >95 | 4277.9 | 4276.2 |
lna4 | ACCCTTAC′CACTCAG | 5′ss | >95 | 4976.3 | 4976.1 |
lna5 | ACCCTTAA′CTCTCAG | 5′ss | 92.3 | 4977.3 | 4975.0 |
lna6 | ACCACC′CTGTCAA-FAM | 3′ss | – | 4908.3 | 4907.0 |
aBold italic: mismatch position; C: 5-methylcytosine; a: 2′-deoxyadenosine; (′) denotes the splice position on the pre-mRNA; (*) denotes a 3′-terminal modification by a 2,5-dimethoxytetrahydrofuran-3,4-diol unit (see Materials and Methods).
bTm values (2 µM duplex in 10 mM NaH2PO4, 150 mM NaCl, pH 7.0) were measured with the RNA complement r(ACUGAGUGGUAAGGGUA).
cMolecular masses were recorded in the negative ion mode and are indicated as [M-H]–.