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. 2004 Jan 15;32(1):346–353. doi: 10.1093/nar/gkh187

Table 1. Oligonucleotides prepared and used in this study.

Oligomer Sequence 5′ → 3′a Target site (exon 4) Tm (°C)b ESI-MSc, calc. ESI-MSc, found
tc1 pCTTAC′CACT* 5′ss 56.4 3281.4 3282.9
tc2 pCCTTAC′CACTC* 5′ss 69.3 3935.8 3937.0
tc3 pCCCTTAC′CACTCA 5′ss 77.4 4388.2 4389.0
tc4 pACCCTTAC′CACTCAG 5′ss 83.2 5106.7 5107.6
tc5 pACCCTTAA′CTCTCAG 5′ss 60.2 5121.7 5121.5
tc6 pACCACC′CTGTCAA-FAM 3′ss 5035.0 5034.8
tcNS pCATTATTGCCCTGAAAGa 6210.2 6209.3
lna1 CTTACCACT 5′ss 82.6 2942.5 2941.0
lna2 CCTTACCACTC 5′ss ≈95 3605.3 3604.0
lna3 CCCTTACCACTCA 5′ss >95 4277.9 4276.2
lna4 ACCCTTACCACTCAG 5′ss >95 4976.3 4976.1
lna5 ACCCTTAACTCTCAG 5′ss 92.3 4977.3 4975.0
lna6 ACCACCCTGTCAA-FAM 3′ss 4908.3 4907.0

aBold italic: mismatch position; C: 5-methylcytosine; a: 2′-deoxyadenosine; (′) denotes the splice position on the pre-mRNA; (*) denotes a 3′-terminal modification by a 2,5-dimethoxytetrahydrofuran-3,4-diol unit (see Materials and Methods).

bTm values (2 µM duplex in 10 mM NaH2PO4, 150 mM NaCl, pH 7.0) were measured with the RNA complement r(ACUGAGUGGUAAGGGUA).

cMolecular masses were recorded in the negative ion mode and are indicated as [M-H].