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. Author manuscript; available in PMC: 2013 Aug 5.
Published in final edited form as: Innate Immun. 2012 Apr 20;18(6):846–855. doi: 10.1177/1753425912443903

Table 1.

Primers for cloning 3′ UTRs. Sequences for 3′UTRs of the indicated human genes were obtained from the National Center for Biotechnology Information website. Primers were designed to include the entire UTR beginning just downstream of the stop codon and extending to the site of poly(A) addition. With the exception of the MyD88 mutated clone, a second set of primers was used on PCR products to generate an XhoI site or an EagI site at the 5′ end of the sense or antisense primers, respectively.

Gene (accession #) Sense primer Antisense primer
MyD88 (NM_002468) 5′-CCTGCACCAAATCTTGGTTCTGG
ACTCG-3′
5′-CAAGGTAGAATATTATTTATTATT
ATAAACTCAGGATGCAAGATATATT
CCAGG-3′
MyD88 mutated 5′-CCCAATGTACCAGCCCTTATAC
CTCTAATGAAGCACAGAGAGAGG-3′
5′-CCTCTCTCTGTGCTTCATTAGAGG
TATAAGGGCTGGTACATTGGG-3′
TLR4 (NM_138554) 5′-GGTAAATCATGGAATCCAGAA
GGAACAGTGGG-3′
5′-CATAACTTTTATTACAATATA
TTATTATAACTATTCAATTTTATTGTTAGT-
TATTGTTAATCTCT-3′
IRAK1 (NM_008363) 5′-AACCTGAAAAGAGCCAGGGACC
TGAAGAAA-3′
5′-TCAGAGTAATCACCCCCAAAACA
AGTGGGG-3′
TRAF6 (NM_004620.3) 5′-TTTTGAAGACTTTCGACTTGCC
CTCACTTGCTC-3′
5′-TTTTCGGCCGAACACTTAAA
CAAGTATTATTCAACAG-3′
TAB2 (NM_015093.3) 5′-GCCAAATGGCCCTGTATCTTC
TCTAAAACCA-3′
5′-CCACATTAGAATATAAGTTTTTTA
ATTTTTATAAATAACTTATCTGTTACAAA-
GATAGTT-3′