Table 1.

Changes in enteric microbiota during experimental colitis

	Method	Model	Abundance	Diversity	Actinobacteria	Firmicutes	Bacteroidetes	Proteobacteria
Lupp et al.[3]	FISH on feces, 16S clone libraries	C. rodentium	↓		↑	↓ (Lachnospiraceae)	↓	↑
Lupp et al.[3]	FISH on feces, 16S clone libraries	DSS	↓			↑ (Clostridiales)	↓	↑ (incl E. coli)
Sokol et al.[4]	Targeted 16S qPCR	TNBS	↑			↑ (C. leptum, C. coccoides) → (Lactobacillus) ↓ (F. prausnitzii)	↑	→ (E. coli)
Schuppler et al.[5]	FISH, 16S clone libraries	IL2−/−						↑ (Enterobacteriaceae)
Ye et al.[6]	16S Clone Library, Culture	IL-10−/−				↑ (Clostridium, Ruminococcus, Lactobacillus) ↓ (Lachnospiraceae)	↑
Lupp et al.[3]	FISH on feces, 16S clone libraries	IL-10−/−				↑	↓	↑ (E. coli)
Wohlgemuth et al.[7*]	DGGE, Culture, FISH	IL-10−/−	↑→	↓				↑ (E. coli)
Bibiloni et al.[8]	DGGE	IL-10−/−			↑ (Bifidobacteria)	↑ (Clostridium, Enterococcus)	↑