Table 1.
Element | Attribute(s) |
---|---|
data |
type |
neighbor |
sequence |
initiation |
type |
terminal |
type |
symmetry |
|
mismatch |
sequence, size, type, loop, closing |
asymmetry |
|
penalty |
type |
parameters |
sequence |
bulge |
size, sequence, type |
closure |
type |
modified |
sequence, type, sens |
CNG |
sequence, repeats |
dangling |
sequence, sens |
enthalpy |
|
entropy |
Types of XML nodes and attributes found in thermodynamic files, defining enthalpy and entropy parameters in cal/mol.