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. Author manuscript; available in PMC: 2013 Aug 5.
Published in final edited form as: Atherosclerosis. 2008 Feb 12;201(1):148–154. doi: 10.1016/j.atherosclerosis.2008.01.011

Table IV.

Minor Allele Frequencies for significant SNPs/haplotypes and for SNPs composing the haplotypes.

Gene SNP Allele MAF (overall) MAF (cases) MAF (controls)
ALOX5AP RS17222814** G→A 0.07 0.02 0.11
ALOX5AP RS17216473†† G→A 0.19 0.23 0.14
ALOX5AP RS10507391 T→A 0.49 0.54 0.43
Three-way haplotype* -- -- 0.07 0.02 0.11
HapB (ALOX5AP) -- -- 0.11 0.15 0.07
ALOX5AP novel haplotype -- -- 0.07 0.02 0.11
ROR2 RS10820899 G→A 0.47 0.56 0.39
GLB1 RS9861960 G→A 0.44 0.37 0.51
SNPs composing HapA (ALOX5AP) RS4769874 G→A 0.05 0.07 0.03
RS9551963 A→C 0.48 0.43 0.53
SNPs composing HapB (ALOX5AP) RS9315050 A→G 0.11 0.11 0.11
RS17222842 C→T 0.08 0.09 0.08
SNPs composing HapK (LTA4H) 12P0557 C→T 0.21 0.19 0.23
RS2660880 G→A 0.06 0.06 0.05
RS6538697 T→C 0.11 0.13 0.08
RS1978331 G→A 0.50 0.51 0.49
RS17677715 A→G 0.15 0.13 0.16
RS2247570 T→C 0.34 0.31 0.36
RS2660898 T→G 0.31 0.31 0.30
RS2540482 T→C 0.25 0.26 0.24
RS2660845 A→G 0.30 0.30 0.30
RS2540475 G→A 0.22 0.23 0.20
*

Haplotype composed of the three individually associated ALOX5AP SNPs (rs17216473 (G), rs17222814 (A), rs10507391 (T)).

**

SNP also included in HapA

SNP also included in both HapA and HapB

††

SNP also included in HapB