Table 1. Characteristics of SNPs studied and study population prevalences.
dbSNP ID | Physical position (bp) | Alleles, functional effect | Minor allele frequency | 95% CI | Hardy-Weinberg (p value) |
rs12068753 | 159692537 | T/A, 5′ UTR | A = 5.8% | 4.1–7.6 | 0.251 |
rs1341665 | 159691559 | G/A, 5′ UTR | A = 44.9% | 41.0–48.7 | 0.443 |
rs12084589 | 159688441 | C/A, 5′ UTR | A = 5.7% | 4.0–7.4 | 0.263 |
rs3093059 | 159685136 | T/C, 5′ UTR | C = 5.8% | 4.1–7.6 | 0.251 |
rs2794521 | 159685096 | T/C, 5′ UTR | C = 21.7% | 18.5–24.9 | 0.101 |
rs3091244 | 159684665 | C/T, 5′ UTR | T = 30.2% | 26.7–33.6 | 0.698 |
rs1800947 | 159683438 | C/G, coding, synon | G = 4.0% | 2.5–5.5 | 0.517 |
rs3093068 | 159681364 | C/G, 3′ UTR | G = 5.9% | 4.1–7.8 | 0.252 |
rs3093070 | 159680817 | A/C, 3′ UTR | C = 0.8% | 0.1–1.5 | 0.885 |
rs876538 | 159675717 | C/T, 3′ UTR | T = 18.4% | 15.8–20.9 | 0.206 |
Boston and Philadelphia replication cohort | |||||
dbSNP ID | alleles,functional effect | Minor allele frequency | 95% CI | Hardy-Weinberg (p value) | |
rs 12068753 proxy for rs3093068 | 159692537 | T/A, 5′ UTR | A = 7% | 5.2–8.8 | 1.00 |
rs876538 | 159675717 | C/T, 3′ UTR | T = 21% | 18.2–23.8 | 0.14 |
rs1205 | 159682233 | C/T, 3′ UTR | T = 35% | 31.7–38.3 | 0.36 |