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. 2004 Feb 18;32(3):1197–1207. doi: 10.1093/nar/gkh271

Table 1. Oligonucleotides used.

Oligo name Oligo sequence
Reconstruction of the Sso7d gene
 Sso-W1
5′-GTATGGCGTGTGGGCAAGATGAT-3′
 Sso-W2
5′-GAAAAGGACGCGCCGAAGGAGCTG-3′
 Sso-C1
5′-CACACGCCATACTTTCTTGATCTTGGAGATGTCTACCTCTTTTTCTTCGCCTTTGTACTTGAACTTTACGGTTGC-3′
 Sso-C2
5′-GCGCGTCCTTTTCGCTTACCGCACCGCGGCCGGTCTTGCCACCGCCCTCGTCGTAGGTGAAGGAGATCATCTTGCC-3′
 Sso-C3
5′-GATTAATCCAGTGCCTTGGGACTAGTGCCACCGCCGCCCTTTTTCTGCTTCTCCAGCATCTGCAGCAGCTCCTTCG-3′
 Sso-R1
5′-ACGAATTCGAGCGCAACCGTAAAGTTCAAG-3′
 Sso-Xba
5′-GCGCTCTAGATTAATCTTTTTCTGCTTCTCCAGCAT-3′
Primers used for activity and processivity assays
 –47M13L
5′-CGCCAGGGTTTTCCCAGTCACGACGTTGTAAAACGACGGCC-3′
 –40M13LFF
5′-FAM-GTTTTCCCAGTCACGACGTTGTAAAACGACGGCC-3′
Primers used for extension efficiency assay
 L30350F
5′-CCTGCTCTGCCGCTTCACGC-3′
 L71-0.5R (0.5 kb)
5′-TCCGGATAAAAACGTCGATGACATTTGC-3′
 L71-1R (1 kb)
5′-GATGACGCATCCTCACGATAATATCCGG-3′
 L72-2R (2 kb)
5′-CCATGATTCAGTGTGCCCGTCTGG-3′
 L72-5R (5 kb)
5′-CGAACGTCGCGCAGAGAAACAGG-3′
 L72-8R (8 kb)
5′-GCCTCGTTGCGTTTGTTTGCACG-3′
 L71-10R (10 kb)
5′-GCACAGAAGCTATTATGCGTCCCCAGG-3′
 L71-12R (12 kb)
5′-TCTTCCTCGTGCATCGAGCTATTCGG-3′
 L71-15R (15 kb)
5′-CTTGTTCCTTTGCCGCGAGAATGG-3′
Primers used for salt dependence PCR assay
 L30350F
5′-CCTGCTCTGCCGCTTCACGC-3′
 L31240R 5′-GCACAGCGGCTGGCTGAGGA-3′