Table 1. Details of real-time RT-PCR primers and results of confirmation.
ProbeName | Primer(5′-3′) | Size (bp) | Real-time FCa | Microarry FCb | Description |
CUST_551 | FP:agatcgcgttcaaacaacaaRP:atctgccggatatgaaccaa | 196 | −2.63 | −6.84 | Expressed protein |
CUST_12936 | FP:gaacgtgatgctgttgttgcRP:atcctcgacatcccaatcag | 192 | −2.64 | −7.27 | Prostatic spermine-binding protein precursor (SBP) |
CUST_4819 | FP:ttaagcgggatcaatggaagRP:caccacgacgtgttaattgc | 210 | −2.05 | −2.14 | Solute carrier family 6 (ko:K05045) |
CUST_12988 | FP:ctgctgtggagggaatgtttRP:tggaggattccaggtttcag | 219 | 50 | 12.56 | Putative uncharacterized protein C14orf165 |
CUST_4112 | FR:gttattggatttcccgctcaPR:atggcaatgaaagtgcatca | 199 | 3.34 | 6.34 | Cyclin-dependent kinase 6, CDK6 |
CUST_10350 | FR:ggattgattccgccattacPR:gaatggcagtattggttgacg | 198 | 4.75 | 6.88 | Asparagine-rich protein (Ag319) (ARP) |
CUST_10723 | FR:tgtgccgttattgcgtttagPR:attatcgcttttgccgtcag | 178 | 2.11 | 4.73 | Expressed protein |
CUST_4101 | FR:atactggtgagcggcctatgPR:gcattcgcaaaccatgtaga | 230 | 3.52 | 4.88 | Iroquois homeobox protein 3, IRX-3 |
CUST_5523 | FR:gcgttcgccaattgaattatPR:tgttgtattgggtggggatt | 184 | 5.2 | 2.56 | Putative eukaryotic translation initiation factor 3 subunit (eIF-3) |
Fold change (FC) is the ratio of gene expression in schistosomes from water buffalo compared to those from goats; p<0.05, FDR<0.1;
Mean FC in real-time PCR results for validation.