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Structure of the HMM for assembling operons/transcripts using RNA-seq reads. E represents the expression state and N the non-expression state, Letters r1, r2,…,rn are the emission values of E, μcontig is the mean length of sufficiently expressed contigs in the positive training set; and s1, s2,…, sN are the emission values of N, and μzero is the mean length of the non-expressed regions in the negative training set.
