Table 2.
Bacterial species investigated in this study
| Organism | Abbreviation | Codon usage separation (CUS) | GC content | Generation times [29] |
|---|---|---|---|---|
|
Acinetobacter ADP1 |
Abay |
0.845 |
40.4 |
0.5 |
|
Bacillus subtilis 168 |
Bsub |
0.869 |
43.5 |
0.43 |
|
Bacteroides thetaiotaomicron VPI-5482 |
Bthe |
0.291 |
42.8 |
1.47 |
|
Caulobacter crescentus NA1000 |
Ccre |
0.754 |
67.2 |
1.5 |
|
Escherichia coli K-12 |
Ecol |
0.879 |
50.8 |
0.35 |
|
Francisella novicida U112 |
Fnov |
0.339 |
32.5 |
3 |
|
Haemophilus influenzae Rd KW20 |
Hinf |
0.877 |
38.2 |
0.5 |
|
Helicobacter pylori 26695 |
Hpyl |
0.148 |
38.9 |
2.4 |
|
Mycoplasma genitalium G37 |
Mgen |
0.529 |
31.7 |
12 |
|
Mycoplasma pulmonis UAB CTIP |
Mpul |
0.032 |
26.6 |
1.5 |
|
Mycobacterium tuberculosis H37Rv |
Mtub |
0.246 |
65.6 |
19 |
|
Porphyromonas gingivalis ATCC 33277 |
Pgin |
0.800 |
48.4 |
2.7 |
|
Pseudomonas aeruginosa UCBPP-PA14 |
Paer |
0.915 |
66.3 |
0.5 |
|
Staphylococcus aureus NCTC 8325 |
Saur |
0.807 |
32.8 |
0.4 |
|
Streptococcus pneumoniae TIGR4 |
Spne |
0.893 |
39.7 |
0.5 |
|
Streptococcus sanguinis SK36 |
Ssan |
0.962 |
43.4 |
- |
|
Salmonella typhimurium LT2 |
Styp |
0.915 |
52.2 |
0.4 |
| Vibrio cholera O1 biovar El Tor N16961 | Vcho | 0.897 | 47.4 | 0.2 |