Table 1.
Amino acid sequence of the tetrameric repeats that constitute the CVR of the B602L gene identified in viruses belonging to p72 genotype IX
| Isolat | Country | p72 genotype | CVR amino acid sequence | No. of repeats | CVR enBank accession no. | Reference |
|---|---|---|---|---|---|---|
| Ug13. Kampala1 |
Uganda |
IX |
AAAA--A----------BNABNaBA |
13 |
KC990856 |
This study |
| Ug12. Kampala4 |
Uganda |
IX |
AAAABNABBNABB-----aaBBNABNaBA |
24 |
KC990870 |
This study |
| Ug11. Mpigi |
Uganda |
IX |
AAAABNABBNABB-----aaBBNABNaBA |
24 |
KC990861 |
This study |
| Ug12. Wakiso |
Uganda |
IX |
AAAABNABBNABB-----aaBBNABNaBA |
24 |
KC990867 |
This study |
| Ug10. Adjumani2 |
Uganda |
IX |
AAAABNABBNABB-----aaBBNABNaBA |
24 |
KC990860 |
This study |
| Ug10. Moyo1 |
Uganda |
IX |
AAAABNABBNABB-----aaBBNABNaBA |
24 |
KC990863 |
This study |
| Ug12. Lira |
Uganda |
IX |
AAAABNABBNABB-----aaBBNABNaBA |
24 |
KC990865 |
This study |
| Ug10. Amuru |
Uganda |
IX |
AAAABNABBNABB-----aaBBNABNaBA |
24 |
KC990868 |
This study |
| Ug12. Kabale1 |
Uganda |
IX |
AAAABNABBNABB-----aaBBNABNaBA |
24 |
KC990857 |
This study |
| Ug11. Kampala2 |
Uganda |
IX |
-AAABNABBNABB------aaBBNABNaBA |
23 |
KC990859 |
This study |
| Ug12. Kampala3 |
Uganda |
IX |
-AAABNABBNABB------aaBBNABNaBA |
23 |
KC990866 |
This study |
| Ug10. Namasuba |
Uganda |
IX |
-AAABNABBNABB------aaBBNABNaBA |
23 |
KC990873 |
This study |
| Ug10. Tororo |
Uganda |
IX |
-AAABNABBNABB------aaBBNABNaBA |
23 |
KC990862 |
This study |
| Ug13. Busia1 |
Uganda |
IX |
-AAABNABBNABB------aaBBNABNaBA |
23 |
KC990871 |
This study |
| Ug13. Busia2 |
Uganda |
IX |
-AAABNABBNABB------aaBBNABNaBA |
23 |
KC990872 |
This study |
| Ug10. Kumi |
Uganda |
IX |
-AAABNABBNABB------aaBBNABNaBA |
23 |
KC990858 |
This study |
| Ug10. Moyo2 |
Uganda |
IX |
-AAABNABBNABB------aaBBNABNaBA |
23 |
KC990864 |
This study |
| Ug12. Kyenjojo |
Uganda |
IX |
-AAABNABBNABB------aaBBNABNaBA |
23 |
KC990869 |
This study |
| Ken11/KakSP |
Uganda |
IX |
-AAABNABBNABB------aaBBNABNaBA |
23 |
AGC93414.1 |
[11] |
| Ken11/Kia2.1 |
Kenya |
IX |
-AAABNABBNABB------aaBBNABNaBA |
23 |
AGC93412.1 |
[11] |
| Ken10/Kis028 |
Kenya |
IX |
-AAABNABBNABB------aaBBNABNaBA |
23 |
AGC93410.1 |
[11] |
| Ken10/KAKFA1 |
Kenya |
IX |
-AAABNABBNABB------aaBBNABNaBA |
23 |
AGC93408.1 |
[11] |
| Ken11/ThikP06 |
Kenya |
IX |
-AAABNABBNABB------aaBBNABNaBA |
23 |
AGC93413.1 |
[11] |
| Ken11/Bus1.2 |
Kenya |
IX |
-AAABNABBNABB------aaBBNABNaBA |
23 |
AGC93411.1 |
[11] |
| Ken10/Kis027 |
Kenya |
IX |
-AAABNABBNABB------aaBBNABNaBA |
23 |
AGC93409.1 |
[11] |
| UG07. Wak2 |
Uganda |
IX |
-AAABNABBNABB-------aa-BNABNaBA |
22 |
ACZ18202.1 |
[12] |
| UG07. Wak4 |
Uganda |
IX |
-AAABNABBNABB-------aa-BNABNaBA |
22 |
ACZ18204.1 |
[12] |
| UG07.F7 |
Uganda |
IX |
-AAABNABBNABB-------aa-BNABNaBA |
22 |
ACZ18206.1 |
[12] |
| UG07. Wak1 |
Uganda |
IX |
-AAABNABBNABB-------aa-BNABNaBA |
22 |
ACZ18201.1 |
[12] |
| UG07. Mukono |
Uganda |
IX |
-AAABNABBNABB-------aa-BNABNaBA |
22 |
ACZ18205.1 |
[12] |
| UG07.F8 |
Uganda |
IX |
-AAABNABBNABB-------aa-BNABNaBA |
22 |
ACZ18207.1 |
[12] |
| Uga_95/1 | Uganda | IX | AAABNABBNABBNABBaaBBNABNaBA | 27 | CAJ90783.1 | [16] |
Key: A, CAST; a, CVST; B, CADT, CADI; N, NVDT. Dashes indicate gaps introduced manually to enable similarities between sequences to be easily visible. The number following the name of the virus isolate indicates the isolation year.