Table 1. Comparison of the nucleotide and amino acid sequences and possible cleavage sites of PLV-CHN and related viruses.
Nucleotide Identity (%) | Amino acid identity (%) | Predicted cleavage sites | ||||
Region | SPaV1 | SPaV1 | LV | PLV-CHN | SPaV1 JQ316470.1 | LV AF327920.2 |
5′UTR | 92 | |||||
VP0 | 76 | 83 | 38 | Q/G | Q/G | Q/G |
VP3 | 76 | 80 | 43 | Q/G | H/G | Q/G |
VP1 | 76 | 84 | 34 | E/E | E/E | E/M |
2A | 79 | 88 | <25 | Q/G | Q/G | Q/S |
2B | 86 | 97 | 28 | Q/S | Q/S | E/G |
2C | 90 | 98 | 35 | Q/A | Q/A | E/M |
3A | 91 | 97 | 35 | Q/R | Q/R | E/R |
3B | 80 | 100 | <25 | Q/G | Q/G | E/A |
3C | 84 | 93 | 31 | Q/G | Q/G | Q/G |
3D | 82 | 88 | 36 | |||
3′UTR | 89 |