. Author manuscript; available in PMC: 2013 Aug 7.

Published in final edited form as: Schizophr Res. 2008 Jul 16;104(0):153–164. doi: 10.1016/j.schres.2008.05.028

Table 6.

Haplotype consisted of the replicated SNPs in the entire sample

3 SNPs Haplotype within the Block A defined by EA					Haplotype frequency	Informative family	Global test (GT) p-value (df, chi-square)	Allele specific test (AST) p-value (Z)
rs9610449	rs6000200	rs2016988	rs2003813	rs2157249	Haplotype frequency	Informative family	Global test (GT) p-value (df, chi-square)	Allele specific test (AST) p-value (Z)

							0.00054 (3, 17.6)
		C	C	T	0.52	66		0.082 (−1.74)
		G ^*	C ^*	T ^*	0.32	85		0.00011 (3.87)
		G	T	C	0.15	45		0.013 (−2.48)

Block E (2 SNPs haplotype) defined by AA
							0.13 (2, 4.05)
T ^**	C ^**				0.81	77		0.098 (−1.65)
C ^**	G ^**				0.19	76		0.081 (1.75)

AA: African-American; EA: European-American; entire sample: African-American, European-American, Chinese and Japanese. Haplotypes with the IF > 10 are not shown for each block because a default value of useful minimum number of family in FBAT is 10.

The most significant haplotype in the combined sample (African-American and European-American).

^**

The most significant haplotype in the African-American sample.