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. 2013 Aug 1;3(8):1341–1351. doi: 10.1534/g3.113.006288

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Copyright © 2013 Tennessen et al.

This is an open-access article distributed under the terms of the Creative Commons Attribution Unported License (http://creativecommons.org/licenses/by/3.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Maternal linkage map FvbMat_4 aligned to pseudochromosome 4 of the F. vesca ssp. vesca reference genome (FvH4_4). Each short vertical line represents an informative marker in our linkage map. The male-sterility locus resides within the red square that maps to the scaffold scB (thick blue line) which has here been inserted into its inferred location in FvH4_4. There are few informative targeted capture markers on scB (blue vertical lines) because it was not included in probe design. Markers that aligned somewhere in the reference genome other than FvH4_4 are indicated as circles along left side of the figure, numbered according to FvH4 pseudochromosome. Markers that aligned to FvH4_4 but mapped to a different linkage group in Fvb are indicated as x marks along the bottom of the figure, numbered according to FvbMat linkage group. Markers that map to one part of FvbMat_4 but align to a different part of FvH4_4 are within-chromosome translocations, such as the markers at 56−58 cM on FvbMat_4 occurring between 14-15Mb on FvH4_4.