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. Author manuscript; available in PMC: 2013 Aug 8.
Published in final edited form as: Mol Phylogenet Evol. 2010 Aug 3;57(2):821–828. doi: 10.1016/j.ympev.2010.07.014

Table 2.

Measures of genetic diversity for mitochondrial and nuclear loci. ATP6 and ATP8 have overlapping reading frames and are considered as a single locus for these measures.Numbers in the labels of the last three rows show the positions of non-recombinant intervals of S7 used for neutrality tests. L, length of sequence; Nhaps, number of distinct haplotypes; h, haplotype diversity; π, nucleotide diversity; SD, standard deviation; k, average number of pairwise differences, α, shape parameter of gamma distribution; nc = not calculated.

Locus L N Nhaps h SD h π SD π k Model α
CR 364 91 81 0.995 0.003 0.01609 0.003 5.680 TrN + G 0.560
ATP68 522 80 30 0.756 0.052 0.00262 0.0003 1.367 TVM + I + G 0.269
COX1 511 57 23 0.627 0.076 0.00203 0.006 1.039 HKY NA
S7 475 76 39 0.971 0.008 0.01616 0.0007 7.676 TrN + I + G 0.654
S7 1–142 142 76 6 0.493 0.064 0.00393 0.0006 0.558 nc nc
S7 64–181 118 76 8 0.701 0.046 0.00897 0.0009 1.059 nc nc
S7 266–328 63 76 9 0.697 0.034 0.02292 0.001 1.444 nc nc