Table 2.

Measures of genetic diversity for mitochondrial and nuclear loci. ATP6 and ATP8 have overlapping reading frames and are considered as a single locus for these measures.Numbers in the labels of the last three rows show the positions of non-recombinant intervals of S7 used for neutrality tests. L, length of sequence; Nhaps, number of distinct haplotypes; h, haplotype diversity; π, nucleotide diversity; SD, standard deviation; k, average number of pairwise differences, α, shape parameter of gamma distribution; nc = not calculated.

Locus	L	N	Nhaps	h	SD h	π	SD π	k	Model	α
CR	364	91	81	0.995	0.003	0.01609	0.003	5.680	TrN + G	0.560
ATP68	522	80	30	0.756	0.052	0.00262	0.0003	1.367	TVM + I + G	0.269
COX1	511	57	23	0.627	0.076	0.00203	0.006	1.039	HKY	NA
S7	475	76	39	0.971	0.008	0.01616	0.0007	7.676	TrN + I + G	0.654
S7 1–142	142	76	6	0.493	0.064	0.00393	0.0006	0.558	nc	nc
S7 64–181	118	76	8	0.701	0.046	0.00897	0.0009	1.059	nc	nc
S7 266–328	63	76	9	0.697	0.034	0.02292	0.001	1.444	nc	nc