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. 2013 Apr 29;20(4):355–374. doi: 10.1093/dnares/dst015

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© The Author 2013. Published by Oxford University Press on behalf of Kazusa DNA Research Institute

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com.

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Figure 3. — The genotyping of 13 polymorphic marker loci [11 and 1 single nucleotide polymorphisms (SNPs) of each TFFDMS and TFGMS markers] identified in different ORF and UTR sequence components of a high seed-size/weight-associated SBP TF gene (A) among 96 association mapping panel constituted 2 haplotypes in wild, 13 haplotypes in desi and 6 haplotypes in kabuli (B). The 21 haplotype marker-based genotyping information produced high LD estimates (r² > 0.15 and P < 0.0001) covering the complete 3000-bp sequenced region of SBP TF gene (C) and thus enhanced its overall LD resolution. The specific haplotypes showing differentiation between small (ICCX-810800) and large (ICC20268) seed-size contrasting chickpea genotypes (B) were represented more in the 96 association mapping panel, which reemphasizes the strong potential of SBP TF for seed-size/weight-specific trait association.