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. 2013 May 5;20(4):403–423. doi: 10.1093/dnares/dst019

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© The Author 2013. Published by Oxford University Press on behalf of Kazusa DNA Research Institute

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com.

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Figure 3. — Phylogenetic relationship and conserved motif compositions of StNAC proteins. (A) Multiple sequence alignment of 136 full-length StNAC proteins was done using ClustalW2, and the phylogenetic tree was constructed using MEGA5.05 by the Neighbor-joining method with 1000 bootstrap replicates. The tree was divided into 12 phylogenetic subgroups designated as I to XII marked with different colour backgrounds. (B) Schematic representation of the conserved motifs in the StNAC proteins as revealed by MEME analysis. Grey lines represent the non-conserved sequences, and each motif is represented by a box numbered at the bottom. The length of protein can be estimated using the scale at the bottom.