TABLE 2.
Characteristics of the 5 novel pig selenoprotein genes
Accession no. | Length |
Identity to human |
Sec position1 | |||
---|---|---|---|---|---|---|
Gene | CDS | Peptide | CDS | Peptide | ||
bp | amino acids | % | ||||
Gpx2 | DQ898282 | 573 | 190 | 94 | 97 | 40 |
Sephs2 | EF033624 | 1356 | 451 | 89 | 92 | 63 |
Sep15 | EF178474 | 489 | 162 | 85 | 93 | 93 |
Sepn12 | EF113595 | 1498 | 498 | 93 | 93 | 370 |
Sepp1 | EF113596 | 1173 | 390 | 84 | 76 | 14 Sec3 |
From the N terminus.
About 180 bp in the 5′-site of CDS of porcine Sepn1 was not available, which in turn resulted in the absence of ∼60 amino acids in the N terminus of the protein sequence. The missing counterpart in the CDS or peptide of human Sepn1 was not compared for the identity analysis.
Positions of the 14 Sec in the Sepp1 peptide were at the 59, 267, 286, 309, 311, 327, 339, 352, 354, 361, 376, 378, 385, and 387 residuals.