Table 1. List of simulations involved in this work.
PDB ID | ions type | force field | time(ns) | abbreviation |
143D | Na+ | parm99 | 1000 | anti_99 |
2GKU | K+ | parm99 | 1000 | hybrid_99 |
143D | Na+ | parmbsc0 | 1000 | anti_bsc0 |
2GKU | K+ | parmbsc0 | 1000 | hybrid_bsc0 |
143D | Na+ | parmbsc0 | 5 | anti_stema |
2GKU | K+ | parmbsc0 | 5 | hybrid_stema |
In these two structures, loop bases are deleted and just G-quartets left.