Table 2. Gene content of the mitochondrial genomes of 19 grouper species with canonical genome organization (genome structure shown in Figure 1A).
Gene or region | Size | Codon | Intergenic nucleotides* | Strand | ||
---|---|---|---|---|---|---|
Nucleotide (bp) | Amino acid | Start | Stop | |||
tRNA-Phe | 69 to 71 | 0 | H | |||
12S rRNA | 952 to 961 | 0 | H | |||
tRNA-Val | 70 to 73 | -1 to 2 | H | |||
16S rRNA | 1695 to 1722 | 0 to 20 | H | |||
tRNA-Leu(UUR) | 73 to 76 | 0 | H | |||
ND1 | 975 | 324 | ATG | TAA/TAG | 0 | H |
tRNA-Ile | 69 to 70 | 4 to 6 | H | |||
tRNA-Gln | 71 | -2 to 0 | L | |||
tRNA-Met | 69 to 70 | -1 to 0 | H | |||
ND2 | 1045 to 1048 | 348 to 349 | ATG | T/TA/TAA/TAG | 0 | H |
tRNA-Trp | 70 to 72 | -2 to 4 | H | |||
tRNA-Ala | 69 | 1 to 2 | L | |||
tRNA-Asn | 73 to 75 | -2 to 1 | L | |||
OL | 33 to 43 | -1 to 0 | - | |||
tRNA-Cys | 66 to 68 | 0 to 27 | L | |||
tRNA-Tyr | 70 to 71 | 0 to 1 | L | |||
COI | 1551 | 516 | GTG | TAA/TAG | 1 | H |
tRNA-Ser(UCN) | 71 | 0 to 3 | L | |||
tRNA-Asp | 72 to 73 | 2 to 8 | H | |||
COII | 691 | 230 | ATG | T | 0 to 8 | H |
tRNA-Lys | 72 to 74 | 0 to 1 | H | |||
ATPase8 | 168 | 55 | ATG | TAA | 0 to 1 | H |
ATPase6 | 684 | 227 | ATG/CTG/TTG | TAA | -10 | H |
COIII | 785 to 786 | 261 | ATG | TA/TAA | -1 | H |
tRNA-Gly | 70 to 73 | -1 to 0 | H | |||
ND3 | 349 | 116 | ATG | T | -2 to 0 | H |
tRNA-Arg | 69 | 0 | H | |||
ND4L | 297 | 98 | ATG | TAA | 0 | H |
ND4 | 1381 | 460 | ATG | T | -7 | H |
tRNA-His | 69 to 73 | 0 | H | |||
tRNA-Ser(AGY) | 70 to 82 | 0 to 10 | H | |||
tRNA-Leu(CUN) | 73 to 74 | 0 to 10 | H | |||
ND5 | 1836 to 1839 | 611 to 612 | ATG | TAA/TAG | -2 to 0 | H |
ND6 | 522 | 173 | ATG | TAA/TAG | -4 | L |
tRNA-Glu | 69 to 70 | 0 | L | |||
Cytb | 1141 to 1144 | 380 | ATG | T | 2 to 9 | H |
tRNA-Thr | 72 to 74 | 0 to 1 | H | |||
tRNA-Pro | 70 to 71 | -1 to 4 | L | |||
Control Region | 721 to 1264 | 0 | - |
* Negative numbers indicate overlapping nucleotides between adjacent genes.