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. Author manuscript; available in PMC: 2014 Aug 1.
Published in final edited form as: J Autoimmun. 2013 May 15;44:61–70. doi: 10.1016/j.jaut.2013.04.002

Figure 3.

Figure 3

Manhattan plot of immunochip association analysis data comparing all IIT cases (n = 53) to HCV controls (n = 190). 182,832 SNPs that passed the quality control testing are sorted by chromosomal location [x- axis] and are plotted against the −log10(p value) [y-axis], with the height of each point corresponding to the strength of association with disease. The dotted line indicates a p-value < 1 × 10−3 (the threshold we chose as our cutoff; see text) and the SNPs that show association with IIT with p < 1 × 10−3 are displayed above this line.