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. Author manuscript; available in PMC: 2014 Apr 12.
Published in final edited form as: J Mol Biol. 2013 Jan 24;425(7):1225–1240. doi: 10.1016/j.jmb.2013.01.020

Table 1.

Coarse-grained comparison of subunit geometries reveals two main differences between cofilactin and bare actin: the actin subunit dihedral angle and the orientation of the R1-R2 vector relative to the filament axis.

Parameters Actin Initial Cofilactin Initial Actin Equilibrated Cofilactin Equilibrated
Bond (Å) R1-R2* 22.82 23.03 22.99±0.39 23.36±0.45
R1-R3 24.72 24.34 24.85±0.28 24.81±0.22
R3-R4 24.99 24.73 24.97±0.28 24.89±0.27
Angle (°) R1-R3-R4 74.22 71.55 74.42±1.96 73.21±1.34
R2-R1-R3 103.09 100.61 102.06±2.06 97.82±3.12
Dihedral (°) R2-R1-R3-R4 11.21 26.74 10.27±3.41 25.73±3.71
Angle (°) R1-R2 vs. TA' 22.12 38.04 24.29±2.49 40.49±4.55
R1-R3 vs. TA' 116.79 114.37 117.57±1.56 119.51±3.51
R3-R4 vs. TA' 11.6 11.4 15.07±1.63 16.07±3.38
*

Residue sets

R1: 5–33, 80–147, 334–349; R2: 34–39, 52–59;

R3: 148–179, 273–333; R4: 180–219, 252–262.

TA': filament axis