Table 1.

Comparison of cisExpress and MatrixREDUCE using 11 gene expression datasets of A.thaliana

Condition	cisExpress			MatrixREDUCE
	Best 5-nt consensus	Position	P-value	Best 5-nt consensus	P-value
Drought	CACGT	−110 … −60	10−14	ACGTG	10−13
Heat	CTAGA	−70 … −50	10−2	TCTAG	10−4
Cold	CTATA	−50 … −15	10−34	TATAT	10−4
Roots	TCTAT	−40 … −20	10−21	TATAA	10−10
Seeds	CATGC	−80 … −44	10−9	CATGC	10−5
Nitrogen	AGGCC	−110 … −50	10−18	AGGCC	10−8
Strength	GGCCC	−110 … −50	10−11	GATCT	10−10
Variability	TATAA	−50 … −10	10−140	TATAT	10−4
Flowers	CTATA	−40 … −20	10−14	CATGC	10−2
Leaves	CTTAT	−40 … −20	10−20	TAGGG	10−9
Light	CCGCG	−110 … −90	10−2	AATAT	10−2