Table 5.
Genic diversity in eastern Pacific Bathymodiolus mussels
| Parameter 1 | N13 | N11 | N9 | GAR | S7 | S11 | S14 2 | S17 | S18 2 | S21 2 | S23 | S31 | S38 | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
COI (N) |
22 |
21 |
62 |
48 |
45 |
21 |
14 |
135 |
47 |
34 |
21 |
41 |
27 |
538 |
|
k |
10 |
12 |
20 |
21 |
16 |
8 |
6 |
37 |
14 |
20 |
11 |
17 |
8 |
121 |
|
H |
13 |
17 |
23 |
28 |
19 |
11 |
6 |
34 |
15 |
20 |
11 |
23 |
14 |
96 |
|
h |
0.810 |
0.871 |
0.753 |
0.856 |
0.839 |
0.776 |
0.769 |
0.841 |
0.710 |
0.934 |
0.819 |
0.870 |
0.658 |
0.890 |
| SD |
0.062 |
0.060 |
0.052 |
0.044 |
0.033 |
0.075 |
0.090 |
0.024 |
0.064 |
0.026 |
0.082 |
0.039 |
0.087 |
0.008 |
| π x100 |
0.674 |
0.710 |
0.741 |
0.761 |
0.597 |
0.618 |
0.247 |
0.485 |
0.242 |
0.600 |
1.394 |
0.673 |
0.523 |
1.637 |
| SD x100 |
0.393 |
0.412 |
0.420 |
0.425 |
0.353 |
0.366 |
0.186 |
0.292 |
0.174 |
0.357 |
0.754 |
0.383 |
0.314 |
0.094 |
| Fu’s Fs |
−0.625 |
−3.360 |
−6.277 |
−7.654 |
−5.578 |
−0.221 |
−2.300 |
−26.905 |
−10.272 |
−13.659 |
0.109 |
−5.300 |
−0.176 |
|
| Prob |
0.369 |
0.044 |
0.023 |
0.003 |
0.012 |
0.500 |
0.021 |
0.000 |
0.000 |
0.000 |
0.554 |
0.031 |
0.508 |
|
|
SAHH (N) |
32 |
30 |
26 |
28 |
22 |
20 |
n.d. |
38 |
n.d. |
n.d. |
42 |
46 |
58 |
232 |
|
k |
2 |
6 |
1 |
3 |
1 |
6 |
|
7 |
|
|
3 |
3 |
3 |
9 |
|
H |
3 |
4 |
2 |
4 |
2 |
4 |
|
6 |
|
|
6 |
5 |
5 |
14 |
|
h |
0.123 |
0.402 |
0.271 |
0.206 |
0.485 |
0.553 |
|
0.617 |
|
|
0.623 |
0.707 |
0.525 |
0.806 |
| SD |
0.078 |
0.104 |
0.099 |
0.101 |
0.064 |
0.111 |
|
0.056 |
|
|
0.044 |
0.036 |
0.071 |
0.013 |
| π x100 |
0.079 |
0.516 |
0.170 |
0.176 |
0.305 |
0.649 |
|
0.568 |
|
|
0.784 |
0.676 |
0.436 |
1.476 |
| SD x100 |
0.138 |
0.423 |
0.213 |
0.217 |
0.305 |
0.504 |
|
0.449 |
|
|
0.493 |
0.504 |
0.372 |
0.894 |
| Fu’s Fs |
−2.437 |
−0.073 |
0.511 |
−2.610 |
1.139 |
0.063 |
|
−1.656 |
|
|
−1.977 |
0.004 |
−0.776 |
|
| Prob |
0.003 |
0.464 |
0.379 |
0.007 |
0.686 |
0.492 |
|
0.127 |
|
|
0.103 |
0.528 |
0.278 |
|
|
ANT (N) |
26 |
28 |
34 |
52 |
24 |
22 |
n.d. |
38 |
n.d. |
n.d |
40 |
54 |
52 |
370 |
|
k |
2 |
1 |
1 |
2 |
1 |
1 |
|
3 |
|
|
2 |
2 |
1 |
3 |
|
H |
1 |
0 |
0 |
1 |
0 |
0 |
|
1 |
|
|
1 |
1 |
0 |
1 |
|
h |
0.148 |
0 |
0 |
0.039 |
0 |
0 |
|
0.240 |
|
|
0.296 |
0.073 |
0 |
0.449 |
| SD |
0.088 |
0 |
0 |
0.036 |
0 |
0 |
|
0.086 |
|
|
−0.079 |
0.048 |
0 |
0.020 |
| π x100 |
0.029 |
0 |
0 |
0.008 |
0 |
0 |
|
0.048 |
|
|
0.060 |
0.015 |
0 |
0.091 |
| SD x100 |
0.049 |
0 |
0 |
0.002 |
0 |
0 |
|
0.063 |
|
|
0.071 |
0.033 |
0 |
0.004 |
| Fu’s Fs |
−0.317 |
0 |
0 |
−1.669 |
0 |
0 |
|
−1.172 |
|
|
0.838 |
−0.949 |
0 |
|
| Prob |
0.182 |
NA |
NA |
0.029 |
NA |
NA |
|
0.131 |
|
|
0.513 |
0.089 |
NA |
|
|
Cat (N) |
36 |
26 |
22 |
50 |
22 |
20 |
n.d. |
42 |
n.d. |
n.d |
40 |
56 |
66 |
380 |
|
k |
0 |
0 |
0 |
1 |
0 |
0 |
|
2 |
|
|
2 |
2 |
0 |
2 |
|
H |
1 |
1 |
1 |
2 |
1 |
1 |
|
3 |
|
|
4 |
3 |
1 |
4 |
|
h |
0 |
0 |
0 |
0.040 |
0 |
0 |
|
0.094 |
|
|
0.480 |
0.198 |
0 |
0.465 |
| SD |
0 |
0 |
0 |
0.380 |
0 |
0 |
|
0.061 |
|
|
0.069 |
0.068 |
0 |
0.017 |
| π x100 |
0 |
0 |
0 |
0.105 |
0 |
0 |
|
0.370 |
|
|
2.267 |
0.948 |
0 |
2.380 |
| SD x100 |
0 |
0 |
0 |
0.314 |
0 |
0 |
|
0.610 |
|
|
1.814 |
1.034 |
0 |
1.834 |
| Fu’s Fs |
0 |
0 |
0 |
−1.636 |
0 |
0 |
|
−2.089 |
|
|
0.294 |
−0.222 |
0 |
|
| Prob |
NA |
NA |
NA |
0.040 |
NA |
NA |
|
0.016 |
|
|
0.555 |
0.338 |
NA |
|
|
Col-1 (N) |
32 |
28 |
24 |
24 |
20 |
22 |
n.d. |
40 |
n.d. |
n.d. |
42 |
46 |
54 |
332 |
|
k |
0 |
0 |
0 |
0 |
0 |
0 |
|
2 |
|
|
2 |
2 |
2 |
3 |
|
H |
1 |
1 |
1 |
1 |
1 |
1 |
|
2 |
|
|
2 |
4 |
4 |
4 |
|
h |
0 |
0 |
0 |
0 |
0 |
0 |
|
0.142 |
|
|
0.177 |
0.467 |
0.526 |
0.370 |
| SD |
0 |
0 |
0 |
0 |
0 |
0 |
|
0.071 |
|
|
0.074 |
0.070 |
0.071 |
0.034 |
| π x100 |
0 |
0 |
0 |
0 |
0 |
0 |
|
0.274 |
|
|
0.340 |
0.777 |
0.715 |
0.652 |
| SD x100 |
0 |
0 |
0 |
0 |
0 |
0 |
|
0.331 |
|
|
0.380 |
0.633 |
0.597 |
0.553 |
| Fu’s Fs |
0 |
0 |
0 |
0 |
0 |
0 |
|
0.773 |
|
|
1.159 |
0.252 |
0.167 |
|
| Prob |
NA |
NA |
NA |
NA |
NA |
NA |
|
0.495 |
|
|
0.590 |
0.537 |
0.526 |
|
|
EF1α (N) |
32 |
28 |
22 |
22 |
18 |
22 |
n.d. |
18 |
n.d. |
n.d. |
42 |
50 |
60 |
314 |
|
k |
0 |
0 |
0 |
0 |
0 |
1 |
|
0 |
|
|
1 |
0 |
0 |
1 |
|
H |
1 |
1 |
1 |
1 |
1 |
2 |
|
1 |
|
|
2 |
1 |
1 |
2 |
|
h |
0 |
0 |
0 |
0 |
0 |
0.091 |
|
0 |
|
|
0.345 |
0 |
0 |
0.474 |
| SD |
0 |
0 |
0 |
0 |
0 |
0.081 |
|
0 |
|
|
0.073 |
0 |
0 |
0.013 |
| π x100 |
0 |
0 |
0 |
0 |
0 |
0.505 |
|
0 |
|
|
1.916 |
0 |
0 |
2.632 |
| SD x100 |
0 |
0 |
0 |
0 |
0 |
1.043 |
|
0 |
|
|
2.14 |
0 |
0 |
2.541 |
| Fu’s Fs |
0 |
0 |
0 |
0 |
0 |
−0.957 |
|
0 |
|
|
1.119 |
0 |
0 |
|
| Prob | NA | NA | NA | NA | NA | 0.07 | NA | 0.576 | NA | NA |
1 Abbreviations: N = sample size per locus; H = number of haplotypes; k = number of polymorphic sites; h = haplotype diversity; π = nucleotide diversity; SD = one standard deviation. NA = no data. Bold values indicate significance.
2 Data from Plouviez et al. 2010; n.d. indicates no data.