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. 2013 Jul 23;64(12):3885–3898. doi: 10.1093/jxb/ert219

Table 1.

Overview of the obtained mRNA-Seq data from giant cells induced by nematode infection in rice and control cells from the vascular root tissue, and mapping of these sequences onto the rice genome

Sample Total number of sequenced fragments Total number of paired mappings Number of mapped fragments Number of unmapped fragments % Unique mapping
Uninfected vascular cells at 7 dai (1) 17 031 983 32 558 679 13 967 317 3 064 666 82.01
Uninfected vascular cells at 7 dai (2) 16 406 474 30 877 769 12 916 523 3 489 951 78.73
Giant cells at 7 dai (1) 18 433 445 36 677 998 14 860 282 3 573 163 80.62
Giant cells at 7 dai (2) 18 253 140 34 825 239 142 94 260 3 958 880 78.31
Uninfected vascular cells at 14 dai (1) 17 135 578 33 563 491 13 585 221 3 550 357 79.28
Uninfected vascular cells at 14 dai (2) 17 600 487 33 773 375 13 622 898 3 977 589 77.40
Giant cells at 14 dai (1) 16 877 180 37 350 477 13 725 022 3 152 158 81.32
Giant cells at 14 dai (2) 17 516 129 37 472 359 13 296 867 4 219 262 75.91
Total 139 254 416 277 099 387 110 268 390 28 986 026 79.18
Reads (two/fragment) 278 508 832
Coverage of the rice genome 26.86X
Coverage of the rice transcriptome 97.63X