Table 1.

Overview of the obtained mRNA-Seq data from giant cells induced by nematode infection in rice and control cells from the vascular root tissue, and mapping of these sequences onto the rice genome

Sample	Total number of sequenced fragments	Total number of paired mappings	Number of mapped fragments	Number of unmapped fragments	% Unique mapping
Uninfected vascular cells at 7 dai (1)	17 031 983	32 558 679	13 967 317	3 064 666	82.01
Uninfected vascular cells at 7 dai (2)	16 406 474	30 877 769	12 916 523	3 489 951	78.73
Giant cells at 7 dai (1)	18 433 445	36 677 998	14 860 282	3 573 163	80.62
Giant cells at 7 dai (2)	18 253 140	34 825 239	142 94 260	3 958 880	78.31
Uninfected vascular cells at 14 dai (1)	17 135 578	33 563 491	13 585 221	3 550 357	79.28
Uninfected vascular cells at 14 dai (2)	17 600 487	33 773 375	13 622 898	3 977 589	77.40
Giant cells at 14 dai (1)	16 877 180	37 350 477	13 725 022	3 152 158	81.32
Giant cells at 14 dai (2)	17 516 129	37 472 359	13 296 867	4 219 262	75.91
Total	139 254 416	277 099 387	110 268 390	28 986 026	79.18
Reads (two/fragment)	278 508 832
Coverage of the rice genome	26.86X
Coverage of the rice transcriptome	97.63X