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. Author manuscript; available in PMC: 2014 May 1.
Published in final edited form as: FEBS J. 2013 Apr 2;280(9):2056–2067. doi: 10.1111/febs.12229

Table II.

Details of the interactions between BOA and 3α,6α-mannopentaose in all four binding sites

Protein Ligand Interaction Type
Binding Site I
W18 indole M3 ring Packing
G19 amide M5′ O5, M5′ O6 BB H-bonds
G20 amide M5′ O6 BB H-bond
R103 Nη2 M3 O3, M3 O4 SC H-bonds
E131 Oε1 M3 O4 SC H-bond
G132 amide M4′ O5, M4′ O6 BB H-bonds
P133 O M4′ O2 BB H-bond
Binding Site II
W85 indole M3 ring Packing
G86 amide M5′ O5, M5′ O6 BB H-bonds
G87 amide M5′ O6 BB H-bond
R36 Nη2 M3 O3, M3 O4 SC H-bonds
E64 Oε1 M3 O4 SC H-bond
G65 amide M4′ O5, M4′ O6 BB H-bonds
P66 O M4′ O2 BB H-bond
Binding Site III
W152 indole M3 ring Packing
G153 amide M5′ O5, M5′ O6 BB H-bonds
G154 amide M5′ O6 BB H-bond
R236 Nη2 M3 O3, M3 O4 SC H-bonds
E264 Oε1 M3 O4 SC H-bond
G265 amide M4′ O5, M4′ O6 BB H-bonds
P266 O M4′ O2 BB H-bond
Binding Site IV
W218 indole M3 ring Packing
G219 amide M5′ O5, M5′ O6 BB H-bonds
G220 amide M5′ O6 BB H-bond
R170 Nη2 M3 O3, M3 O4 SC H-bonds
E197 Oε1 M3 O4 SC H-bond
G198 amide M4′ O5, M4′ O6 BB H-bonds
P199 O M4′ O2 BB H-bond

BB and SC refer to backbone and side-chain H-bonds, respectively.