Table II.
Details of the interactions between BOA and 3α,6α-mannopentaose in all four binding sites
Protein | Ligand | Interaction Type |
---|---|---|
Binding Site I | ||
W18 indole | M3 ring | Packing |
G19 amide | M5′ O5, M5′ O6 | BB H-bonds |
G20 amide | M5′ O6 | BB H-bond |
R103 Nη2 | M3 O3, M3 O4 | SC H-bonds |
E131 Oε1 | M3 O4 | SC H-bond |
G132 amide | M4′ O5, M4′ O6 | BB H-bonds |
P133 O | M4′ O2 | BB H-bond |
Binding Site II | ||
W85 indole | M3 ring | Packing |
G86 amide | M5′ O5, M5′ O6 | BB H-bonds |
G87 amide | M5′ O6 | BB H-bond |
R36 Nη2 | M3 O3, M3 O4 | SC H-bonds |
E64 Oε1 | M3 O4 | SC H-bond |
G65 amide | M4′ O5, M4′ O6 | BB H-bonds |
P66 O | M4′ O2 | BB H-bond |
Binding Site III | ||
W152 indole | M3 ring | Packing |
G153 amide | M5′ O5, M5′ O6 | BB H-bonds |
G154 amide | M5′ O6 | BB H-bond |
R236 Nη2 | M3 O3, M3 O4 | SC H-bonds |
E264 Oε1 | M3 O4 | SC H-bond |
G265 amide | M4′ O5, M4′ O6 | BB H-bonds |
P266 O | M4′ O2 | BB H-bond |
Binding Site IV | ||
W218 indole | M3 ring | Packing |
G219 amide | M5′ O5, M5′ O6 | BB H-bonds |
G220 amide | M5′ O6 | BB H-bond |
R170 Nη2 | M3 O3, M3 O4 | SC H-bonds |
E197 Oε1 | M3 O4 | SC H-bond |
G198 amide | M4′ O5, M4′ O6 | BB H-bonds |
P199 O | M4′ O2 | BB H-bond |
BB and SC refer to backbone and side-chain H-bonds, respectively.