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. 2013 May 2;151(3):398–407. doi: 10.1002/ajpa.22280

TABLE 1.

Variants identified by sequencing the conserved region homologous to the human region surrounding SNP rs12913832

Positiona −630 −580 −544 −526 −518 −515 −497 −489 −441 −409 −297 −207 −119 −108 −76 −33 −6 +338
Variant G > A G > A G > A C > T C > T C > T C > A G > A G > T C > T A > T G > A G > A C > T G > A T > C C > T C > T
fwildb NA NA NA NA NA NA NA NA NA NA NA 0 0.056 0.056 0 0 0 NA
fcaptivec NA 0 0 0.13 0.13 0 0.13 0 0 NA 0.19 0.063 0 0 0 0.13 0 NA
fblackd 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.58 1e 0 0
fblue-eyedf 0.17 0.14 0.14 0 0 0.14 0 0.14 0.14 0.14 0 0 0 0 0 1e 0.64 0.33
pa*g NA NA NA 0.43 0.43 NA 0.28 NA NA NA 0.47 0.83 0.44 0.27 NA 0.66 NA NA
pb*h NA NA NA 0.94 0.94 NA 0.26 NA NA NA 0.40 0.28 0.29 0.41 NA 0.44 NA NA
plemuri 0.27 0.21 0.21 NA NA 0.21 NA 0.33 0.21 0.47 NA NA NA NA 0.76 NA 0.00084 0.28
a

Relative to the base pair homologous to human SNP rs12913832.

b

Frequency of the derived allele in the wild Japanese macaque sample.

c

Frequency of the derived allele in captive Japanese macaque founders.

d

Frequency of the derived allele in black lemur founders.

e

The derived state in macaques (inferred from M. mulatta) is the ancestral state in lemurs (inferred from L. catta).

f

Frequency of the derived allele in blue-eyed black lemur founders.

g

P value of Wald association test with CIE a* in Japanese macaques.

h

P value of Wald association test with CIE b* in Japanese macaques.

i

P value of Wald association test with lemur species.