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. 2013 Aug 19;8(8):e71972. doi: 10.1371/journal.pone.0071972

Table 1. List of primers used in HIV-1 genotypic drug-resistance testing.

Target region Amplicon Primers
Size (bp) Positiona Reaction Direction Name Nucleotide sequence (5′ to 3′)
Protease 424 2,168 to 2,591 RT-PCR Forward DRPRO5 AGA CAG GYT AAT TTT TTA GGG A
Reverse DRPRO2L TAT GGA TTT TCA GGC CCA ATT TTT GA
Nested PCR Forward DRPRO1M AGA GCC AAC AGC CCC ACC AG
Reverse DRPRO6 ACT TTT GGG CCA TCC ATT CC
Reverse transcriptase 838 2,510 to 3,347 RT-PCR Forward DRRT1L ATG ATA GGG GGA ATT GGA GGT TT
Reverse DRRT4L TAC TTC TGT TAG TGC TTT GGT TCC
Nested PCR Forward DRRT7L GAC CTA CAC CTG TCA ACA TAA TTG G
Reverse DRRT6L TAA TCC CTG CAT AAA TCT GAC TTG C

bp, base pairs; PCR, polymerase chain reaction; and RT-PCR, reverse transcription and polymerase chain reaction.

a

Amplicon positions in the reference HIV-1 HXB2 sequence are represented.