Table 1. Summary of sequencing and de novo assembling of seed coat transcriptome in Brassica juncea.
Item | Library | Number (n) | Sequence (bp) | Average length (bp) | N50 (bp) | Maximum (bp) |
Raw read | SY | 60,371,476 | 6,037,147,600 | 100 | - | - |
NILA | 57,465,530 | 5,746,553,000 | 100 | - | - | |
Clean read | SY | 59,735,444 | 5,537,475,659 | 92.7 | - | - |
NILA | 56,423,676 | 5,320,752,647 | 94.3 | - | - | |
Total | Contig | 99,096 | 65,776,836 | 664 | 1,060 | 10,232 |
Scaffold | 79,520 | 68,319,851 | 859 | 1,284 | 12,040 | |
Unigene | 69,605 | 60,382,999 | 868 | 1,307 | 12,040 |