Table 1. Analysis of the representative features within the mRNAs in the different translation classes.
Feature analyzed | Class I | Class II | Class III |
Number of mRNAs | 696 | 14946 | 456 |
cDNA length (nts) | 1204* | 1641* | 2323* |
CDS length (nts) | 857* | 1279* | 1981* |
5′-UTR length (nts) | 121 | 139 | 126 |
5′-UTR G+C content (%) | 42.33* | 37.61* | 36.07* |
5′-UTR (1–10) G+C content (%) | 40.2* | 36.3* | 35.3* |
5′-UTR ΔG (kcal/mol) | −21.13 | −22.07 | −18.63 |
3′-UTR length (nts) | 226 | 223 | 216 |
3′-UTR G+C content (%) | 32.29 | 31.64 | 31.02 |
3′-UTR ΔG (kcal/mol) | −40.69 | −39.91 | −37.49 |
uAUG ≥1 (%) | 24.57 | 32.18 | 30.92 |
uAUG ≥2 (%) | 11.21 | 15.84 | 14.47 |
uAUG ≥3 (%) | 6.18 | 8.66 | 6.36 |
uAUG ≥4 (%) | 3.59 | 5.09 | 3.73 |
Data sets for the indicated parameters of the representative gene models (n = 16098) were retrieved and analyzed as stated in Materials and Methods. Values are expressed as medians or as percentage when stated. Cumulative curves were plotted separately for all the features analyzed (data not shown). K–S test was used to validate the variations in the distribution of the individual features among the established groups, using Class II as reference. Statistically significant differences, with correlation with the relative translation efficiency, were highlighted by an asterisk (p<0.001).