Table 1. Primer sequences and their domain specific coverage rates.
Primera | Sequence (5′–>3′) | E. coli Position | Coverage (%)b | Reference | |||
Eukarya | Bacteria | Archaea | Total | ||||
338r | GCTGCCTCCCGTAGGAGT | 355–338 | - | 88,4 | - | 75,6 | Suzuki (1996) [44] |
518r | ATTACCGCGGCTGCTGG | 542–518 | 88,3 | 85,1 | 0,4 | 82,2 | Muyzer (1993) [45] |
799f | AACMGGATTAGATACCCKG | 781–799 | - | 78,5 | 71,7 | 69,4 | Chelius & Triplett (2001) [18] |
926f | AACTCAAAGGAATTGACGG | 908–926 | - | 77,4 | - | 65,7 | Lane (1991) [46] |
1062r | CTCACRRCACGAGCTGAC | 1081–1064 | - | 89,5 | 2,4 | 77,1 | Allen (2005) [47] |
, Primer names according to first description; primer names indicate both position and direction.
, According to SILVA SSU Ref 113 NR database.